Factsheet for GSMUA_Achr6P21120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P28080_001
GSMUA_Achr2P15470_001
GSMUA_Achr4P11860_001
GSMUA_Achr5P09600_001
GSMUA_Achr9P23800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	GSMUA_Achr10P...	AT1G29170.1	17267444
AT1G13180.1	GSMUA_Achr2P15470_001	AT1G29170.1	17267444
AT1G13180.1	GSMUA_AchrUn_...	AT1G29170.1	17267444
AT1G13180.1	GSMUA_Achr4P11860_001	AT2G22640.1	17267444
AT1G13180.1	GSMUA_Achr9P23800_001	AT2G22640.1	17267444
AT1G13180.1	GSMUA_AchrUn_...	AT3G27000.1	17267444
AT1G13180.1	GSMUA_Achr1P28080_001	AT3G49290.1	17267444
AT1G13180.1	GSMUA_Achr5P09600_001	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0137g00280.t01	Wine grape	cytosol	87.82	87.62
GSMUA_Achr2P05970_001	Banana	cytosol	36.07	87.01
GSMUA_Achr9P07630_001	Banana	cytosol	86.65	86.45
Os02t0596900-01	Rice	cytosol	86.42	86.22
TraesCS6A01G211000.1	Wheat	cytosol	85.71	85.71
TraesCS6D01G194100.1	Wheat	cytosol	85.71	85.71
TraesCS6B01G240500.1	Wheat	cytosol	85.48	85.48
KXG30555	Sorghum	cytosol	85.71	84.53
PGSC0003DMT400027956	Potato	cytosol	85.25	84.45
Solyc05g013940.2.1	Tomato	cytosol	84.78	84.38
KRH59228	Soybean	nucleus	84.54	84.35
Zm00001d017106_P001	Maize	cytosol	85.25	84.06
Solyc04g024530.2.1	Tomato	cytosol	83.84	83.45
AT1G13180.1	Thale cress	cytosol	81.97	81.97
CDY34585	Canola	cytosol	81.26	81.26
CDX98005	Canola	cytosol	80.8	80.8
Bra019815.1-P	Field mustard	cytosol	80.8	80.8
Bra016738.1-P	Field mustard	cytosol	80.8	80.8
CDY21087	Canola	cytosol	80.56	80.56
HORVU6Hr1G053910.4	Barley	cytosol	83.37	80.54
CDY19392	Canola	cytosol	80.33	80.33
Zm00001d050981_P001	Maize	cytosol	84.54	78.65
KRH59222	Soybean	cytosol	35.36	78.65
GSMUA_Achr2P05960_001	Banana	cytosol	54.8	76.47
GSMUA_Achr8P01270_001	Banana	cytosol	73.07	73.07
GSMUA_Achr10P...	Banana	cytosol	27.17	42.18
GSMUA_Achr10P...	Banana	cytosol	30.45	39.51
GSMUA_Achr2P08030_001	Banana	cytosol	32.08	39.14
GSMUA_Achr3P20240_001	Banana	cytosol	27.4	39.0
GSMUA_Achr2P15150_001	Banana	cytosol	31.62	38.68
GSMUA_Achr7P18630_001	Banana	cytosol	28.81	38.44
GSMUA_Achr11P...	Banana	cytosol	31.38	38.4
GSMUA_Achr4P31250_001	Banana	cytosol	33.72	38.2
GSMUA_AchrUn_...	Banana	plasma membrane	33.72	38.2
GSMUA_Achr6P02480_001	Banana	cytosol	26.46	38.05
GSMUA_Achr5P29190_001	Banana	cytosol	30.91	37.93
GSMUA_Achr3P02960_001	Banana	cytosol	33.49	37.93
GSMUA_Achr8P16150_001	Banana	cytosol	33.49	37.93
GSMUA_Achr9P08850_001	Banana	cytosol	30.91	37.82
GSMUA_Achr9P03170_001	Banana	cytosol	33.26	37.77
GSMUA_Achr1P05990_001	Banana	plasma membrane	33.26	37.67
GSMUA_Achr2P16160_001	Banana	cytosol	33.26	37.67
GSMUA_Achr6P25350_001	Banana	cytosol	33.26	37.67
GSMUA_Achr10P...	Banana	cytosol	23.18	37.64
GSMUA_Achr10P...	Banana	cytosol	33.02	37.4
GSMUA_Achr7P10410_001	Banana	cytosol	33.02	37.4
GSMUA_Achr11P...	Banana	cytosol	32.79	37.14
GSMUA_Achr8P02660_001	Banana	cytosol	32.79	37.14
GSMUA_Achr1P20200_001	Banana	cytosol	29.27	36.02
GSMUA_Achr6P34320_001	Banana	cytosol	20.37	35.66
GSMUA_AchrUn_...	Banana	cytosol	30.68	33.68
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	17.56	25.77
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	28.1	25.37
GSMUA_AchrUn_...	Banana	cytosol	24.59	24.14

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp3	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0034314	EnsemblPlantsGene:GSMUA_Achr6G21120_001	EnsemblPlants:GSMUA_Achr6P21120_001	EnsemblPlants:GSMUA_Achr6T21120_001	UniProt:M0T8W0	PFAM:PF00022
PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000295DD4E	SEG:seg

Description

Actin-related protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G21120_001]

Coordinates

chr6:+:16502296..16518664

Molecular Weight (calculated)

47753.9 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.213

Length

427 amino acids

Sequence
(BLAST)

001: MDAASRPAVV IDNGTGYTKM GYAGNVEPCF IIPTVVAVNE SFSNQSRSSA KGNWLAQHNA SVMADLDFLI GEEALMRSRF STAYNLSYPI RNGQVENWDA
101: MERFWQQCIF NYLRCDPEDH YFLLTESPLT APENREYTGE IMFETFNVPG LYIAVQPVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA DGYVIGSSIK
201: SIPIAGKDVT QFIQQLMKER GEHVPPEDSL EVARKVKEMY CYTCSDIVKE FNKHDRLPGK YTKQWTGVKP KTGASYTCDI GYERFLGPEI FFHPEIYGSD
301: FITPLPVVID KCIQSSPIDT RRALYKNIVL SGGSTMFKDF HRRLQRDLKK IVDARIVASA ARLDGDVKSQ PIQVNVVSHP IQRFAVWFGG SILASTPEFY
401: RACHTKAEYD EYGASICRTN PVFKGMH

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.