Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 36.88 | 35.17 |
| GSMUA_Achr10P... | Banana | cytosol | 35.6 | 32.66 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 25.6 | 29.71 |
| GSMUA_Achr5P29540_001 | Banana | cytosol | 11.19 | 29.12 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 32.39 | 27.49 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 32.02 | 27.2 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 31.47 | 26.73 |
| AT2G34150.2 | Thale cress | nucleus | 20.09 | 26.67 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 31.1 | 26.2 |
| KXG31590 | Sorghum | cytosol | 32.2 | 25.58 |
| Os01t0208600-01 | Rice | cytosol | 31.19 | 25.49 |
| CDY17225 | Canola | nucleus | 18.53 | 24.91 |
| CDY43322 | Canola | nucleus | 20.55 | 23.5 |
| Bra010847.1-P | Field mustard | nucleus | 20.37 | 23.12 |
| CDX90172 | Canola | nucleus | 20.37 | 23.12 |
| Zm00001d008906_P003 | Maize | cytosol | 29.45 | 23.01 |
| AT1G29170.1 | Thale cress | nucleus | 20.92 | 22.35 |
| CDY63143 | Canola | nucleus | 18.17 | 22.3 |
| Bra005450.1-P | Field mustard | nucleus | 18.07 | 22.18 |
| CDX78876 | Canola | nucleus | 13.49 | 20.25 |
| KRH42863 | Soybean | nucleus | 24.59 | 20.07 |
| Solyc02g076840.2.1 | Tomato | nucleus | 23.76 | 19.91 |
| GSMUA_Achr5P14370_001 | Banana | cytosol | 14.68 | 18.87 |
| GSMUA_Achr5P29520_001 | Banana | cytosol | 2.94 | 17.78 |
| KRH58965 | Soybean | nucleus | 14.95 | 16.46 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.02 | 15.49 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 16.88 | 14.73 |
| CDX78875 | Canola | extracellular, vacuole | 9.63 | 12.82 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 16.61 | 12.28 |
| CDX99451 | Canola | nucleus | 17.8 | 10.18 |
| AT4G18600.1 | Thale cress | nucleus | 16.51 | 8.88 |
| Bra013329.1-P | Field mustard | nucleus | 17.25 | 8.21 |
| GSMUA_Achr5P14360_001 | Banana | cytosol, nucleus | 5.05 | 3.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P15470_001 | EnsemblPlants:GSMUA_Achr2T15470_001 | EnsemblPlantsGene:GSMUA_Achr2G15470_001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | ncoils:Coil | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | SEG:seg |
| UniParc:UPI0002949E2A | UniProt:M0S888 | MapMan:20.2.2.2.4 | : | : | : |
Description
Putative SCAR-like protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15470_001]
Coordinates
chr2:-:16771943..16778744
Molecular Weight (calculated)
119295.0 Da
IEP (calculated)
6.043
GRAVY (calculated)
-0.723
Length
1090 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRLQVRN EFRLGDAKLY DEGKSDKDDS KAILDGVAVA GLVGILRQLG DLTEFAADVF HDLHEQVTAT AARGRKISTR IQNIEFALPF VEKAVKGQRS
0101: HIHFAYVAGS KWHARLQDEK SQLVPSELPY FMIESYEECR EPPQLYLLDK FDHHGTGACL KRYSDPSYFR RAWAASETEK AEGLQRKKVQ KIQRKGSQPR
0201: IGEVQREAYI SCKNSSTRFA SPSIDGQSFT TEDASVHDAG LNSEFSSRSP SFGSRIREQT LDVNNSAVPG GLKDNEVSES EILCNHSDLN ANGSHDNSKG
0301: RLGDSSNQGS LHRSSAVRSY SVTWDEKTEI VKPRNSVSCD VTLINTVQDS ESLQVDSEPQ NQNHTKAGAF SQADILLDTG KVRVSLSGAN CMDEVTSEAE
0401: NHADARNTLE SDAEKEVECQ TKWEVNPPCD FSSREMQPGN IRKQDRAAPN PSIVKLPNAS QSSLKQDSSS MFMVLKPSGS SGHMPPPQET VDSSPNHEYS
0501: FGNNIHDNSE GKFDRGNRNS HLPESDIADS QIMMADKSRP KTSVACAPSI QLWANGGLFG VGASKPLFLG VMNNSSVDVT SGSRNCSSNL PNNILKTSKR
0601: INGSSTTSDA IFSFSESISR ASKSAQKIDG ESPVSRSLVQ SNSKNHSIVT NVSSNRPVTT KNSAVVDGVP LSVVYNTKSQ YHAYNQSTKG SSSGFSEPGQ
0701: RFLANSLETK GSIANTDGSV PSGDKRKSED ISRLNNRMKA PSEAASLAFF GQGIKKQFDG ESLERSTSST SYLPEQSSPP LEHMKISFQP MNGLETSKMK
0801: LKVLNGSLPE TSEDSIFPAF QLIQGPVDSS PDNGSESDDD TFCISCPSSE DLFSPLTDAN SELWDKDERS ECEDHELCDV SPRISMLNAS FSGYMKLEKV
0901: NQSMMDMESG LGRYGVGNTE GTFQDVATLK LPVRGSAVSL GNQQRRHDSS SDEPASVQMK TNGHLPPPPP LPPMKWRISK PSITSGGDEA ANFTDNTNYL
1001: NGLQTPTSFS PHQQDQSAPR QPCDSDLMMP YSNKTQDQQK PNKQKNLREG ASNKEVDLWG ELLCQIRNKS YNLRCTSMSK ISLQPQATSM
0101: HIHFAYVAGS KWHARLQDEK SQLVPSELPY FMIESYEECR EPPQLYLLDK FDHHGTGACL KRYSDPSYFR RAWAASETEK AEGLQRKKVQ KIQRKGSQPR
0201: IGEVQREAYI SCKNSSTRFA SPSIDGQSFT TEDASVHDAG LNSEFSSRSP SFGSRIREQT LDVNNSAVPG GLKDNEVSES EILCNHSDLN ANGSHDNSKG
0301: RLGDSSNQGS LHRSSAVRSY SVTWDEKTEI VKPRNSVSCD VTLINTVQDS ESLQVDSEPQ NQNHTKAGAF SQADILLDTG KVRVSLSGAN CMDEVTSEAE
0401: NHADARNTLE SDAEKEVECQ TKWEVNPPCD FSSREMQPGN IRKQDRAAPN PSIVKLPNAS QSSLKQDSSS MFMVLKPSGS SGHMPPPQET VDSSPNHEYS
0501: FGNNIHDNSE GKFDRGNRNS HLPESDIADS QIMMADKSRP KTSVACAPSI QLWANGGLFG VGASKPLFLG VMNNSSVDVT SGSRNCSSNL PNNILKTSKR
0601: INGSSTTSDA IFSFSESISR ASKSAQKIDG ESPVSRSLVQ SNSKNHSIVT NVSSNRPVTT KNSAVVDGVP LSVVYNTKSQ YHAYNQSTKG SSSGFSEPGQ
0701: RFLANSLETK GSIANTDGSV PSGDKRKSED ISRLNNRMKA PSEAASLAFF GQGIKKQFDG ESLERSTSST SYLPEQSSPP LEHMKISFQP MNGLETSKMK
0801: LKVLNGSLPE TSEDSIFPAF QLIQGPVDSS PDNGSESDDD TFCISCPSSE DLFSPLTDAN SELWDKDERS ECEDHELCDV SPRISMLNAS FSGYMKLEKV
0901: NQSMMDMESG LGRYGVGNTE GTFQDVATLK LPVRGSAVSL GNQQRRHDSS SDEPASVQMK TNGHLPPPPP LPPMKWRISK PSITSGGDEA ANFTDNTNYL
1001: NGLQTPTSFS PHQQDQSAPR QPCDSDLMMP YSNKTQDQQK PNKQKNLREG ASNKEVDLWG ELLCQIRNKS YNLRCTSMSK ISLQPQATSM
0001: MPRNVYGMNQ SEVYRNVDRE DPKAILNGVA VTGLVGVLRQ LGDLAEFAAE IFHGIQEEVM ATASRSNQLK IRLQHIEATV PPLEKAMLAQ TTHIHFAYTG
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
Arabidopsis Description
SCAR3Protein SCAR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.