Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 10.17 | 36.71 |
| GSMUA_Achr5P29540_001 | Banana | cytosol | 11.05 | 32.94 |
| GSMUA_Achr5P29520_001 | Banana | cytosol | 4.48 | 31.11 |
| GSMUA_Achr5P14370_001 | Banana | cytosol | 14.89 | 21.93 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 22.66 | 19.2 |
| GSMUA_AchrUn_... | Banana | cytosol | 16.09 | 17.59 |
| CDY69042 | Canola | nucleus | 16.73 | 17.53 |
| GSMUA_Achr10P... | Banana | cytosol | 16.49 | 17.34 |
| CDY39815 | Canola | nucleus | 13.77 | 17.29 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 14.73 | 16.88 |
| Zm00001d028803_P002 | Maize | nucleus | 15.13 | 15.84 |
| CDX91460 | Canola | cytosol | 17.45 | 15.59 |
| KRH00374 | Soybean | cytosol | 16.57 | 15.59 |
| Bra005107.1-P | Field mustard | cytosol | 17.69 | 15.48 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 16.09 | 15.41 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 16.01 | 15.23 |
| EER92402 | Sorghum | nucleus | 15.69 | 15.07 |
| AT2G38440.1 | Thale cress | cytosol | 16.49 | 14.72 |
| Zm00001d047701_P002 | Maize | nucleus | 15.13 | 14.67 |
| KRH40820 | Soybean | cytosol | 15.69 | 14.41 |
| Os03t0298700-01 | Rice | cytosol | 14.81 | 14.2 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 14.89 | 14.09 |
| AT5G01730.1 | Thale cress | cytosol | 13.13 | 14.02 |
| KRH65511 | Soybean | cytosol | 18.41 | 13.63 |
| Solyc09g014980.2.1 | Tomato | cytosol | 18.25 | 13.38 |
| KRH76068 | Soybean | cytosol | 17.85 | 13.16 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 9.93 | 10.57 |
| GSMUA_Achr5P14360_001 | Banana | cytosol, nucleus | 6.08 | 4.4 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P04670_001 | EnsemblPlants:GSMUA_Achr9T04670_001 | EnsemblPlantsGene:GSMUA_Achr9G04670_001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | ncoils:Coil | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 | SEG:seg |
| UniParc:UPI00029602EE | UniProt:M0TXH6 | MapMan:20.2.2.2.4 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G04670_001]
Coordinates
chr9:-:3054683..3062431
Molecular Weight (calculated)
137130.0 Da
IEP (calculated)
4.505
GRAVY (calculated)
-0.571
Length
1249 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPTIRYQIKN EYGLGRSELY GAADKNDPEA LLEGVAMAGL VGLLRQLGDL AEFATEVFHN LHEEVMNTAS RGHNMILRVQ QLETQLPAIS NGLFHGSGSS
0101: CLSCREGIDW HCNIQVDHNL ITAGDMPHFF MDMYEECHVP PQLFKLDKFD VGGDGACLKR YSDPSLFMME LTSSRLVEHD PRREKRTCKT KLDIISNVLL
0201: ENCLGCVFFS SLHQELLSVK IATSFSLQKK VSFSCGGEPP KSFLMSHFDS RYFFLDTFIE LFLDKVTLQH VKLKPRQLNE SVSHSLRSYM ENHIDLLPTE
0301: QQVASETSII QSIGMKSADL IKSATEVHAI VVDTSSNREK NQSRSPTKQE MTTAGDSEKQ KIERMNFSDK QFEPTSEPSE VDLNLSVDQE VEQNGFSPDT
0401: ECRSQNSSDG YISDEISSDL DNYMDALTTM ESELETDAEN QGNTDSVFVS TESQETDSDA SDANEEQEEL QAQYSKQYFI KNSASSPGFT TIFRKGAANL
0501: SFSDTLGHMA AQLLEENKND SDFPPESDVG LGEMKGTHFE QTYNEPVKCK SSEHSLLRAS DVSSSAVHRE AFCRSSITDL TSTISLVTLN IMETSPSYER
0601: KTDQAVSHLD GESPCKIDAS ELPSEEKINM LHGEFAKNPG ILSDSLHHMT DVKLLMKDDI PKESDPNEYI KEQSTHDVVS SNRPVLHLQK QHETALEVGT
0701: TDIEVSDHIK SQESEKHDQG ACCLVKPAVL DEDLGNAITG NDSLAASTLV LTHENADAVT QGITPIPNMS TSKEDILSGA HESPWTFTGQ KAFSDNTDVL
0801: SEPVGIILST ENELPKCNPE ESGDDITSDV DFSESNMPSS NETICGELSF EGSIPFQCNS DLHKNTSGSV SVPAPLIRLN KDSISETILQ QSSEQQPQLA
0901: SSAPLPEDNV TSEDTKEILP GRLTKPPRAS LVSSCSVAQP PSGSNTDISL STVENEHSGE LLAGVEIAGS DCTVQSPKSC DITVAVKGGY EDILHSDRKL
1001: VHPALELPHE EDKPVHDGNA FEEDCMRATE LPSTVENESS RDISVSKGSK TYPPTLSEVI PSLNERCQDL ELKRSQNGIA DGEKHKDTHE VAGSALTVNG
1101: KLPLPPSTKP KKSGHGSLST EEKDSSSLHY LTTPTTENEK PTNKLRLVIS RPNDPLIEAI ASHDKSKLRK APQLIHSLPK SDEKGSFLEQ IRNKSFNLKP
1201: MVAPTVKFKG GPPTDVKVIA ILEKANAIRQ ACAGSDDDDD EEDSWKSDS
0101: CLSCREGIDW HCNIQVDHNL ITAGDMPHFF MDMYEECHVP PQLFKLDKFD VGGDGACLKR YSDPSLFMME LTSSRLVEHD PRREKRTCKT KLDIISNVLL
0201: ENCLGCVFFS SLHQELLSVK IATSFSLQKK VSFSCGGEPP KSFLMSHFDS RYFFLDTFIE LFLDKVTLQH VKLKPRQLNE SVSHSLRSYM ENHIDLLPTE
0301: QQVASETSII QSIGMKSADL IKSATEVHAI VVDTSSNREK NQSRSPTKQE MTTAGDSEKQ KIERMNFSDK QFEPTSEPSE VDLNLSVDQE VEQNGFSPDT
0401: ECRSQNSSDG YISDEISSDL DNYMDALTTM ESELETDAEN QGNTDSVFVS TESQETDSDA SDANEEQEEL QAQYSKQYFI KNSASSPGFT TIFRKGAANL
0501: SFSDTLGHMA AQLLEENKND SDFPPESDVG LGEMKGTHFE QTYNEPVKCK SSEHSLLRAS DVSSSAVHRE AFCRSSITDL TSTISLVTLN IMETSPSYER
0601: KTDQAVSHLD GESPCKIDAS ELPSEEKINM LHGEFAKNPG ILSDSLHHMT DVKLLMKDDI PKESDPNEYI KEQSTHDVVS SNRPVLHLQK QHETALEVGT
0701: TDIEVSDHIK SQESEKHDQG ACCLVKPAVL DEDLGNAITG NDSLAASTLV LTHENADAVT QGITPIPNMS TSKEDILSGA HESPWTFTGQ KAFSDNTDVL
0801: SEPVGIILST ENELPKCNPE ESGDDITSDV DFSESNMPSS NETICGELSF EGSIPFQCNS DLHKNTSGSV SVPAPLIRLN KDSISETILQ QSSEQQPQLA
0901: SSAPLPEDNV TSEDTKEILP GRLTKPPRAS LVSSCSVAQP PSGSNTDISL STVENEHSGE LLAGVEIAGS DCTVQSPKSC DITVAVKGGY EDILHSDRKL
1001: VHPALELPHE EDKPVHDGNA FEEDCMRATE LPSTVENESS RDISVSKGSK TYPPTLSEVI PSLNERCQDL ELKRSQNGIA DGEKHKDTHE VAGSALTVNG
1101: KLPLPPSTKP KKSGHGSLST EEKDSSSLHY LTTPTTENEK PTNKLRLVIS RPNDPLIEAI ASHDKSKLRK APQLIHSLPK SDEKGSFLEQ IRNKSFNLKP
1201: MVAPTVKFKG GPPTDVKVIA ILEKANAIRQ ACAGSDDDDD EEDSWKSDS
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.