Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91460 | Canola | cytosol | 83.89 | 71.53 |
| Bra005107.1-P | Field mustard | cytosol | 79.78 | 66.6 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 15.1 | 52.02 |
| AT2G38440.1 | Thale cress | cytosol | 51.26 | 43.67 |
| CDY17225 | Canola | nucleus | 13.34 | 19.61 |
| CDY39815 | Canola | nucleus | 16.11 | 19.3 |
| CDX78876 | Canola | nucleus | 11.49 | 18.87 |
| KRH00374 | Soybean | cytosol | 20.97 | 18.83 |
| KRH40820 | Soybean | cytosol | 20.97 | 18.38 |
| CDY63143 | Canola | nucleus | 12.92 | 17.34 |
| CDX90172 | Canola | nucleus | 13.93 | 17.29 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 17.53 | 16.73 |
| EER92402 | Sorghum | nucleus | 18.2 | 16.68 |
| CDY43322 | Canola | nucleus | 13.26 | 16.58 |
| Os03t0298700-01 | Rice | cytosol | 18.04 | 16.5 |
| KRH76068 | Soybean | cytosol | 23.24 | 16.35 |
| KRH65511 | Soybean | cytosol | 23.15 | 16.35 |
| Zm00001d047701_P002 | Maize | nucleus | 17.62 | 16.3 |
| Solyc09g014980.2.1 | Tomato | cytosol | 23.24 | 16.26 |
| Zm00001d028803_P002 | Maize | nucleus | 16.02 | 16.01 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 16.36 | 14.95 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 16.28 | 14.78 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 16.28 | 14.7 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 16.19 | 13.09 |
| CDX78875 | Canola | extracellular, vacuole | 7.47 | 10.87 |
| CDX99451 | Canola | nucleus | 16.53 | 10.34 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 8.56 | 8.7 |
Protein Annotations
| EnsemblPlants:CDY69042 | EnsemblPlantsGene:GSBRNA2T00082579001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:A0A078JU65 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 | ProteinID:CDY69042 | ProteinID:CDY69042.1 |
| SEG:seg | UniParc:UPI0004EDF279 | UniProt:A0A078JU65 | MapMan:20.2.2.2.4 | : | : |
Description
BnaCnng61540DBnaCnng61540D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JU65]
Coordinates
chrLK038509:-:1..4412
Molecular Weight (calculated)
128673.0 Da
IEP (calculated)
4.127
GRAVY (calculated)
-0.640
Length
1192 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLTRYQSRN EYGLADPDLY QSADKDDPEA LLEGVAMAGL VGLLRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLESELPFVE KALLCQTDHS
0101: PFFSNKGVEW HSNLQMEQSV VTRGDLPRCV MDSYEESRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRHE TSSYEASWDD IQREKKSLKA KRRASHWRNG
0201: GTPENALTSH AKLHELFREE HLEAIHSDPA RVVKLKTRKL DGYSLISKSG ESYMGRFVQT SVNNEAGYEN ISLNQPELLT WNIDSAKDVV TDIPEISMLD
0301: APEKSHGGTR TDVSLPNQQE NAGFIEKDIE TVPESTHNGF PGTTLTKDSQ TNLNGKQGFL QHRSYSEDLT SEADNYVDAP ATMESETETD DEYSRLKHRS
0401: DALNDGNHHT YSDVDEKREN PPQFSFLHSV GNTPVSENGQ GSFGKRSTCF SYSDTASVSI DDQSDGEKFS GRLPSTSSVK SELVGPSSTA TPEANKVSHD
0501: SNVQESVSSS NADGQASFIS NDSCSSPRSV SQNAESCSLT VQSLAPEVVE TSVELARINP VKGGNDGSEV DPVDSRSGAS FDVKNSNFPS ETSSVSSTSE
0601: GSKYDTAVQK NCMVDYSSNV ANSVPGPPVF VDSQTGEQLP VADNDVETNS PVAANSGNDT ESCDGSSRTG EVLPFSAGME MEVSPDFASK VCLPGTIDES
0701: LFEDTLDDET PSVTVANAVS GVDSRSADVD NEQSCAFGTT AEVSVSESHE DTLENGMPAP TELDSMLTSA FNSGGEKSMG YASPSCSRFD EQISDIPAEF
0801: HSSHIHDEGV HDLPGLDNIS TDIVPKEDLA VSDNHADISS DDEDHAVSLS STSMKGSLPW RSTNTSKSSS EATDSCHDTA VESNGILPAK NNSALEKTVQ
0901: ESPLEASSEG LGTSLDNNDL AGSESVSPMI SLDQSNRDTE TKSSCESIPD ENGIDSLPAN NLNLLESLTT EPLVKVKTPC VSHALEDEEL KQSSVSRGLE
1001: FVPQSAGIEW NNPKQELNLD PIFPSFGLIP ETTTPNQEDM PPLPPLPPMQ WRIGKAPQSF LPNFMGELGE TSSSASSAAP PSGSSLNVQL WSTPELSESI
1101: GREKSEQLPG ESMTSESEKP LHSSIQFPSV ATDLNSQYDT DPSIELLAIP NHGSIEDVGS EENNLLADHT SQNQELVYSQ ESSLQLPQEP SA
0101: PFFSNKGVEW HSNLQMEQSV VTRGDLPRCV MDSYEESRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRHE TSSYEASWDD IQREKKSLKA KRRASHWRNG
0201: GTPENALTSH AKLHELFREE HLEAIHSDPA RVVKLKTRKL DGYSLISKSG ESYMGRFVQT SVNNEAGYEN ISLNQPELLT WNIDSAKDVV TDIPEISMLD
0301: APEKSHGGTR TDVSLPNQQE NAGFIEKDIE TVPESTHNGF PGTTLTKDSQ TNLNGKQGFL QHRSYSEDLT SEADNYVDAP ATMESETETD DEYSRLKHRS
0401: DALNDGNHHT YSDVDEKREN PPQFSFLHSV GNTPVSENGQ GSFGKRSTCF SYSDTASVSI DDQSDGEKFS GRLPSTSSVK SELVGPSSTA TPEANKVSHD
0501: SNVQESVSSS NADGQASFIS NDSCSSPRSV SQNAESCSLT VQSLAPEVVE TSVELARINP VKGGNDGSEV DPVDSRSGAS FDVKNSNFPS ETSSVSSTSE
0601: GSKYDTAVQK NCMVDYSSNV ANSVPGPPVF VDSQTGEQLP VADNDVETNS PVAANSGNDT ESCDGSSRTG EVLPFSAGME MEVSPDFASK VCLPGTIDES
0701: LFEDTLDDET PSVTVANAVS GVDSRSADVD NEQSCAFGTT AEVSVSESHE DTLENGMPAP TELDSMLTSA FNSGGEKSMG YASPSCSRFD EQISDIPAEF
0801: HSSHIHDEGV HDLPGLDNIS TDIVPKEDLA VSDNHADISS DDEDHAVSLS STSMKGSLPW RSTNTSKSSS EATDSCHDTA VESNGILPAK NNSALEKTVQ
0901: ESPLEASSEG LGTSLDNNDL AGSESVSPMI SLDQSNRDTE TKSSCESIPD ENGIDSLPAN NLNLLESLTT EPLVKVKTPC VSHALEDEEL KQSSVSRGLE
1001: FVPQSAGIEW NNPKQELNLD PIFPSFGLIP ETTTPNQEDM PPLPPLPPMQ WRIGKAPQSF LPNFMGELGE TSSSASSAAP PSGSSLNVQL WSTPELSESI
1101: GREKSEQLPG ESMTSESEKP LHSSIQFPSV ATDLNSQYDT DPSIELLAIP NHGSIEDVGS EENNLLADHT SQNQELVYSQ ESSLQLPQEP SA
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.