Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 9.23 | 39.31 |
| GSMUA_Achr5P29540_001 | Banana | cytosol | 9.84 | 34.61 |
| GSMUA_Achr5P29520_001 | Banana | cytosol | 3.8 | 31.11 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 19.2 | 22.66 |
| GSMUA_Achr5P14370_001 | Banana | cytosol | 12.28 | 21.34 |
| EER92402 | Sorghum | nucleus | 17.71 | 20.06 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 17.77 | 19.95 |
| Zm00001d047701_P002 | Maize | nucleus | 17.3 | 19.8 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 17.44 | 19.71 |
| Zm00001d028803_P002 | Maize | nucleus | 15.74 | 19.45 |
| Os03t0298700-01 | Rice | cytosol | 17.03 | 19.26 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 17.03 | 19.02 |
| GSMUA_AchrUn_... | Banana | cytosol | 14.11 | 18.2 |
| CDY39815 | Canola | nucleus | 12.28 | 18.19 |
| KRH00374 | Soybean | cytosol | 16.08 | 17.85 |
| KRH40820 | Soybean | cytosol | 15.94 | 17.28 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 12.28 | 16.61 |
| AT2G38440.1 | Thale cress | cytosol | 15.74 | 16.58 |
| GSMUA_Achr10P... | Banana | cytosol | 13.23 | 16.41 |
| AT5G01730.1 | Thale cress | cytosol | 13.03 | 16.41 |
| CDY69042 | Canola | nucleus | 13.09 | 16.19 |
| CDX91460 | Canola | cytosol | 14.86 | 15.67 |
| KRH65511 | Soybean | cytosol | 17.77 | 15.52 |
| KRH76068 | Soybean | cytosol | 17.77 | 15.47 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 12.28 | 15.43 |
| Bra005107.1-P | Field mustard | cytosol | 14.93 | 15.41 |
| Solyc09g014980.2.1 | Tomato | cytosol | 17.3 | 14.96 |
| GSMUA_Achr5P14360_001 | Banana | cytosol, nucleus | 6.04 | 5.15 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P32700_001 | EnsemblPlants:GSMUA_Achr6T32700_001 | EnsemblPlantsGene:GSMUA_Achr6G32700_001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 | SEG:seg | UniParc:UPI000296B8D3 |
| UniProt:M0TC64 | MapMan:20.2.2.2.4 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G32700_001]
Coordinates
chr6:+:31973102..31981601
Molecular Weight (calculated)
162402.0 Da
IEP (calculated)
4.551
GRAVY (calculated)
-0.553
Length
1474 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPTIRYRIRN EYGLGASELY GAADKNDPEA LLEGVAAAGL VGLLRQLGDL AEFAAEVFHN LYEEVINTAS RGHKLLLQVQ QLETDLKSIG FSSESASSCL
0101: SYKQGIDWHC NLQIDHNIIT PGDMPHFIME TYRECRGPPQ FFKLDKYDLA GAGACLKRYT DPSFFRIELA SRLVEDNAQS EKRACKIKVS YSFNGESPEP
0201: FVMPCIDSRY LSLFPEPFIE LFIIQVHLEH VKLKPRQLNE SVIHRLKNYL EDHIDFHRVV QQLLSQSSVN QSVMMKSTDS GESVTEVHKM KQETERKGLS
0301: GKESEPASEL GIEHPIYSEF IQNGFSPDAE CRSENSSDGY LSDEISSELD NYMDALTTVE SNRETDIENL GKLDSVLNSI ESRETDSDTN EEQEELKAQY
0401: LEQYSIENST SSPGFSTIFR KGSANPSFSD TLGHLAAQLL EENKNDSGFP LDSDVGLGET NEIHFDQPYD KQVTCEFSDH LLISGACDVM TLDNPTSAVH
0501: GEAYPSLCTT DSTLTISLVT VGMNETTPLE KVPDQVVIHL DGELQCIKKN SELSSQERSN MIHRELAKNP DVVSDSLHHM MDQNLSRKDD NTKEIDSDNS
0601: IKEQSSHDIA STKNGTVLHS QKQHETTLER GITGIEVSPA SFSMNGVKFL ELAKQDQGAC FLVKPVILDP ESGNVITSDD GLSSSKSVLI LKHVDALTTG
0701: KTPISIMSHF EKDTLYGTDK SQQSCTGEEA FPDNMHFLSG KLKNDMMQGS MHTVDLRVVP HKSTMSDTQK NVENIKSCNG NTSCQNDVAH IYNENGDQSI
0801: CSPDVCSFNL ELQQQVVADG AYLGERTHKI IEQTCSEDAT QLDYSSSTYI CTSSDKQASS SPSLIPAETF GTKISSSLEP LQKSSPENLK EIIPEIVLVK
0901: TAETFEFFGK ESSRDPDNVS LIQDEQQLKS SAPHSVEDSS AKQRSTGIYS TELADKKIPV DSSESECPID SKASILCPAK SSNDYMVLAE PSGLSQNVSE
1001: SQGDGELNLI LLQQNCKHLE PFEEISSTEN ELLYVAHNPR ESVPHINDSD VSFSEPNIPS SKEIISGRLY REGFFLFQCN CIADTIPQQA SEQQPELASG
1101: SPLLENCATS ENTEAISQIA HLPPIPWGLT KPPLISLVSS RNVAQPPSGS NLAISSISAV QNEPSQKLLA TGIEIAESDY VVRSQKSCKV PASVKESYEH
1201: DTLDSDGKIT RPALESLLEE DKQVYDHNAT GEGIWKSTEV PSTGENKSSQ DVPVLPSDET QHSKLSEVTP CLNEKTQDLD SSRSQNGAAN SDRKSPIPFI
1301: VASAVEVHKF IHEVTGSAVP PRLPPLPMTK FKNPRHGFLS TEEKSSSTVH DSTTETSENE KPTTKIHPAI HRPNDPLIEA IVSHDRSKLR KAHELIRSSA
1401: MPKSDETGSF LEQIRNKSFS LKPTVAPAVR FKGGPPRNLK VIAILEKANA IRQACAGSDE DDDDDNDEDS WSDS
0101: SYKQGIDWHC NLQIDHNIIT PGDMPHFIME TYRECRGPPQ FFKLDKYDLA GAGACLKRYT DPSFFRIELA SRLVEDNAQS EKRACKIKVS YSFNGESPEP
0201: FVMPCIDSRY LSLFPEPFIE LFIIQVHLEH VKLKPRQLNE SVIHRLKNYL EDHIDFHRVV QQLLSQSSVN QSVMMKSTDS GESVTEVHKM KQETERKGLS
0301: GKESEPASEL GIEHPIYSEF IQNGFSPDAE CRSENSSDGY LSDEISSELD NYMDALTTVE SNRETDIENL GKLDSVLNSI ESRETDSDTN EEQEELKAQY
0401: LEQYSIENST SSPGFSTIFR KGSANPSFSD TLGHLAAQLL EENKNDSGFP LDSDVGLGET NEIHFDQPYD KQVTCEFSDH LLISGACDVM TLDNPTSAVH
0501: GEAYPSLCTT DSTLTISLVT VGMNETTPLE KVPDQVVIHL DGELQCIKKN SELSSQERSN MIHRELAKNP DVVSDSLHHM MDQNLSRKDD NTKEIDSDNS
0601: IKEQSSHDIA STKNGTVLHS QKQHETTLER GITGIEVSPA SFSMNGVKFL ELAKQDQGAC FLVKPVILDP ESGNVITSDD GLSSSKSVLI LKHVDALTTG
0701: KTPISIMSHF EKDTLYGTDK SQQSCTGEEA FPDNMHFLSG KLKNDMMQGS MHTVDLRVVP HKSTMSDTQK NVENIKSCNG NTSCQNDVAH IYNENGDQSI
0801: CSPDVCSFNL ELQQQVVADG AYLGERTHKI IEQTCSEDAT QLDYSSSTYI CTSSDKQASS SPSLIPAETF GTKISSSLEP LQKSSPENLK EIIPEIVLVK
0901: TAETFEFFGK ESSRDPDNVS LIQDEQQLKS SAPHSVEDSS AKQRSTGIYS TELADKKIPV DSSESECPID SKASILCPAK SSNDYMVLAE PSGLSQNVSE
1001: SQGDGELNLI LLQQNCKHLE PFEEISSTEN ELLYVAHNPR ESVPHINDSD VSFSEPNIPS SKEIISGRLY REGFFLFQCN CIADTIPQQA SEQQPELASG
1101: SPLLENCATS ENTEAISQIA HLPPIPWGLT KPPLISLVSS RNVAQPPSGS NLAISSISAV QNEPSQKLLA TGIEIAESDY VVRSQKSCKV PASVKESYEH
1201: DTLDSDGKIT RPALESLLEE DKQVYDHNAT GEGIWKSTEV PSTGENKSSQ DVPVLPSDET QHSKLSEVTP CLNEKTQDLD SSRSQNGAAN SDRKSPIPFI
1301: VASAVEVHKF IHEVTGSAVP PRLPPLPMTK FKNPRHGFLS TEEKSSSTVH DSTTETSENE KPTTKIHPAI HRPNDPLIEA IVSHDRSKLR KAHELIRSSA
1401: MPKSDETGSF LEQIRNKSFS LKPTVAPAVR FKGGPPRNLK VIAILEKANA IRQACAGSDE DDDDDNDEDS WSDS
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.