Factsheet for AT5G01730.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39815	Canola	nucleus	29.66	34.87
AT2G34150.2	Thale cress	nucleus	12.82	18.27
AT2G38440.1	Thale cress	cytosol	20.6	17.23
AT1G29170.1	Thale cress	nucleus	13.76	15.78
Zm00001d028803_P002	Maize	nucleus	15.64	15.34
Os03t0298700-01	Rice	cytosol	16.24	14.58
Zm00001d047701_P002	Maize	nucleus	15.73	14.29
EER92402	Sorghum	nucleus	15.73	14.14
TraesCS4D01G190300.1	Wheat	nucleus	15.3	13.73
TraesCS4A01G115200.1	Wheat	nucleus	15.3	13.63
HORVU4Hr1G055030.24	Barley	nucleus	15.21	13.48
GSMUA_Achr9P04670_001	Banana	cytosol	14.02	13.13
GSMUA_Achr6P32700_001	Banana	cytosol	16.41	13.03
TraesCS4B01G189000.1	Wheat	nucleus	9.32	9.29
AT4G18600.1	Thale cress	nucleus	15.04	8.68

Protein Annotations

Gene3D:1.20.5.340	Gene3D:1.20.58.1570	MapMan:20.2.2.2.4	EntrezGene:831687	ProteinID:AED90383.1	ProteinID:ANM68918.1
ArrayExpress:AT5G01730	EnsemblPlantsGene:AT5G01730	RefSeq:AT5G01730	TAIR:AT5G01730	RefSeq:AT5G01730-TAIR-G	EnsemblPlants:AT5G01730.1
TAIR:AT5G01730.1	EMBL:AY743927	Unigene:At.71562	ProteinID:CAB82289.1	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010287
GO:GO:0016043	GO:GO:0030036	GO:GO:0031209	GO:GO:0051127	RefSeq:NP_001318456.1	RefSeq:NP_195793.3
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PANTHER:PTHR12902	PANTHER:PTHR12902:SF12	UniProt:Q5XPJ6	InterPro:SCAR/WAVE_fam	UniParc:UPI000044ED40	Symbol:WAVE3
SEG:seg	:	:	:	:	:

Description

SCAR4Protein SCAR4 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ6]

Coordinates

chr5:-:272832..277886

Molecular Weight (calculated)

128625.0 Da

IEP (calculated)

4.285

GRAVY (calculated)

-0.678

Length

1170 amino acids

Sequence
(BLAST)

0001: MALTRYQIRN EYGLADKELY QSADKEDPEA LLEAASMAGL VGVLRQLGDL SEFAAEVFHC LHEQLMTTAA RGHGLAMRLQ HLEADFPSVE IPILSQTDHS
0101: TFFYEPGLEW HSDLQTKEDL ISPRNLPRCI MDSYEECHGP PQLFLLDKFD VAGSGSCLKR YSDPSLLKTH TTSAVVATSK LGKDKRLRQS KKKGSHTTIK
0201: ETPEDSRTSH AKLHQLFFLE HVENGHRNPE FHVKLKRRQL NGPPINSSSG ASYMEKFLKN SSPYCERVHG TMDQSSPAME TEVTVCSEQE DLPIPSLVYS
0301: NSGGTRKYNE MEIESIAGHE ILEIPFVPHE ITVNEKSPVV CLESSSSVNL CCKTNNDADS PASTESEVKE AGSDDKAGCD HGFPGFGQPQ ICTNAEVNQT
0401: EVLTQFSNVL RHSPEEGESS LLCTDIQRAS PESKPHKAEE AAVDLDESFS QMTPDIDSAG MGTLEILQTP FSLSCYESPA NLPEDSGSHL ELQSNKANAE
0501: ACEVFEVRRD PMLNISPETH LLKVTQVPQD AYEGGTNDVH SQHVFSVETA SEISVSALVE DQFSSITNQE IEALESEDIS SEAGHFIPDT KKSLNETSVA
0601: LESDFLLPNH YISTFDNFED LSLSADAQDY AAPKEDETNS QDGSSMNPAQ SKHISTSEIS SENGTLMSDT PRDLHTGYGS LSASSCLEDG LANPDLAEIS
0701: SYSGQEDPQT MSIVSDDSSD PEVPIPDGTC FAGDVDHDNQ TGLNNKAIET VPQKELETIS DPQESLLGTE ECLSSEYCLQ IQNQRQESPS ETGSANSRTS
0801: SDESPPTQNG SVGVQSSPLD VFPSSITEIE ALHAPYQEIF TSLNDHISES VLSKGLTDEE DFLNVSPESI LPLSTSLHET PQANPEITPP LPPLPPTQWW
0901: MGKLVESTEM PSLAGSGNNS FNIQRDENTQ NGSVQANEAQ YPSEVSVTDG ENHNFHIYTE ESKATEEQSP SGVNGTSDTY MESKHKCLNR TPEDSFSLAE
1001: SAQGLEADWR TEAMALEWFS QNLREHNNPH PAKLEEEEPQ VDHPLEKPGQ TKFRQTLRDN NSYNQNQKAG KLKRDEDTLV IGIDRSMLRK VSEGNRTHVG
1101: ARVDENDSLL EIIRSKSFNL RPADASGRPN FQVAVPKTNL KVAAILEKAN TLRQAMAGSD DEHDSDSWSE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.