Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010847.1-P | Field mustard | nucleus | 49.41 | 52.5 |
| CDX90172 | Canola | nucleus | 49.41 | 52.5 |
| CDY43322 | Canola | nucleus | 45.78 | 49.0 |
| AT2G34150.2 | Thale cress | nucleus | 37.75 | 46.89 |
| Zm00001d025836_P001 | Maize | cytosol | 3.63 | 29.6 |
| Zm00001d025835_P001 | Maize | cytosol | 3.63 | 29.6 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 3.73 | 26.39 |
| KRH42863 | Soybean | nucleus | 32.65 | 24.94 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.59 | 22.83 |
| Solyc02g076840.2.1 | Tomato | nucleus | 28.63 | 22.44 |
| GSMUA_Achr10P... | Banana | cytosol | 25.29 | 21.72 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 26.67 | 21.02 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 26.37 | 20.95 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 22.35 | 20.92 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 25.88 | 20.58 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 25.69 | 20.42 |
| Os01t0208600-01 | Rice | cytosol | 26.27 | 20.09 |
| KXG31590 | Sorghum | cytosol | 26.96 | 20.04 |
| Zm00001d008906_P003 | Maize | cytosol | 24.71 | 18.06 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.35 | 16.9 |
| AT2G38440.1 | Thale cress | cytosol | 19.02 | 13.87 |
| AT5G01730.1 | Thale cress | cytosol | 15.78 | 13.76 |
| AT4G18600.1 | Thale cress | nucleus | 19.22 | 9.66 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | EntrezGene:839791 | UniProt:A0A178WGL1 | ProteinID:AAF88121.1 |
| ProteinID:AEE31052.1 | ArrayExpress:AT1G29170 | EnsemblPlantsGene:AT1G29170 | RefSeq:AT1G29170 | TAIR:AT1G29170 | RefSeq:AT1G29170-TAIR-G |
| EnsemblPlants:AT1G29170.1 | TAIR:AT1G29170.1 | EMBL:AY743925 | Unigene:At.51182 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 |
| GO:GO:0031209 | GO:GO:0051127 | RefSeq:NP_174212.2 | ProteinID:OAP16603.1 | PO:PO:0000293 | PANTHER:PTHR12902 |
| PANTHER:PTHR12902:SF1 | UniProt:Q9LP46 | InterPro:SCAR/WAVE_fam | UniParc:UPI00000A50A2 | Symbol:WAVE2 | SEG:seg |
Description
SCAR3Protein SCAR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP46]
Coordinates
chr1:-:10190137..10195213
Molecular Weight (calculated)
113036.0 Da
IEP (calculated)
4.783
GRAVY (calculated)
-0.773
Length
1020 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPRNVYGMNQ SEVYRNVDRE DPKAILNGVA VTGLVGVLRQ LGDLAEFAAE IFHGIQEEVM ATASRSNQLK IRLQHIEATV PPLEKAMLAQ TTHIHFAYTG
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.