Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 29.52 | 40.89 |
| Zm00001d025836_P001 | Maize | cytosol | 3.69 | 38.4 |
| Zm00001d025835_P001 | Maize | cytosol | 3.69 | 38.4 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 4.0 | 36.11 |
| AT2G34150.2 | Thale cress | nucleus | 21.06 | 33.37 |
| CDY17225 | Canola | nucleus | 20.45 | 32.8 |
| KRH42863 | Soybean | nucleus | 29.9 | 29.14 |
| Bra010847.1-P | Field mustard | nucleus | 21.37 | 28.96 |
| CDX90172 | Canola | nucleus | 21.37 | 28.96 |
| Bra005450.1-P | Field mustard | nucleus | 19.75 | 28.94 |
| AT1G29170.1 | Thale cress | nucleus | 22.44 | 28.63 |
| CDY43322 | Canola | nucleus | 20.75 | 28.33 |
| CDY63143 | Canola | nucleus | 18.75 | 27.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.44 | 25.55 |
| GSMUA_Achr10P... | Banana | cytosol | 22.6 | 24.75 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 24.52 | 24.65 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 24.06 | 24.4 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 23.98 | 24.3 |
| CDX78876 | Canola | nucleus | 13.53 | 24.24 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 23.9 | 24.24 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 19.91 | 23.76 |
| KRH58965 | Soybean | nucleus | 17.83 | 23.43 |
| Os01t0208600-01 | Rice | cytosol | 23.83 | 23.24 |
| KXG31590 | Sorghum | cytosol | 22.98 | 21.79 |
| Zm00001d008906_P003 | Maize | cytosol | 22.14 | 20.65 |
| CDX78875 | Canola | extracellular, vacuole | 8.92 | 14.16 |
| Solyc09g014980.2.1 | Tomato | cytosol | 15.83 | 12.09 |
| AT4G18600.1 | Thale cress | nucleus | 17.22 | 11.05 |
| CDX99451 | Canola | nucleus | 15.99 | 10.91 |
| Bra013329.1-P | Field mustard | nucleus | 16.14 | 9.17 |
Protein Annotations
| EnsemblPlants:Solyc02g076840.2.1 | EnsemblPlantsGene:Solyc02g076840.2 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 |
| InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | SEG:seg | UniParc:UPI0002767940 | UniProt:K4B8R1 |
| MapMan:20.2.2.2.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:41959548..41968912
Molecular Weight (calculated)
144379.0 Da
IEP (calculated)
4.739
GRAVY (calculated)
-0.775
Length
1301 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRTAVRN VYGLGTPELY RDAEKEDPKA VLDGVAVAGL VGILRQLGDL AEFAAEVFHG LQEQVMVTSS RSNKLVVRVQ KIEAALPPLE KSVLAQQSHL
0101: HFAYTAGSNW HARIRSEQNH FIYNDLPRFI MDSYEECHAP PRLHLLDKFD PGGPGSCLKR YSDPTFFKRA SVGSDEEYIA KVLKEKKGRK IKKKGSWRRN
0201: GEVSRSASMP NYGSRMQFAY RNLDRRPSWV QSFSAYDTTL KSDIDSRHGS GLTDYVSQTS FSIQPEDGKS ETVSSTIKMQ HNQSFDYSFL EEKSDHTFND
0301: IDKDFSQELT DLVSTSVSWN MKLPDTQESK GSFDSTSQLH LNNTFNHDFP EERREVVYDD IGNIVSEEQA DRCTSSITWN DKTGREKQES RESFSSPSQI
0401: HHDNLPDCAS PVRKGDDEYS DMGNSLTEEQ IGRNLLPVAL SDKMRTAEVE SKEIFYSPLQ MNPSASIEDD SPNEKLWVIS DEESNNFPQG QVVLSSPFSS
0501: SSVKNEQLDL SIQKYDFDES LEALQENLVL DTQVLDIATS ENIQQQSSEP EAEIIQRSIS YESQFDDIES ESDSFMDALN TIESESETDL DCQRKRAMEL
0601: ESSLKTESSL NGTHVNSAEL SDRNLSTPIP EAAARNSPEN RGFGGKTNLV SADSDPGDFS FSNKVKRKEI PENISSGFDE ILSSPQIAGI TLKLDSSIDV
0701: PSSKRSNFLE ASQEEPLVSN HITSSPRNPS SALPVVNKIH CSPSDSEKPP PQLLATPKVK FWTNGGLLGL EPSKPPDGVI NSVGQVYESN QNEEVIASRQ
0801: DPVPSSEKHT GKQDDVQNTS REKADCQNSG QGVAFSIKNI SSRFSAKDLD VKLDKSSNLY QQNCTGKPLH SSSNGYGMTS RTIGTVSPES PILAGQENGK
0901: NSSRILELGN RLLTNGFHGK LSLGWNDKTD SASSFNTGSN EPINDYQQCV GRTIKDFPGR VSPFTSPPSS PPLGHMKISF QPIDSIETTK LKLRFPESNN
1001: DMFPSFQLVP EPSIPLQEVG SDSDDDTFSG SSPDLSDDYL SHQSESNSEQ WESGNFPNLK DQEVYNALHR ISLTESTSTS FENGRTTHQD LHTCSRNHIP
1101: FAESSLEDSP SDNLFDLPVL DTQHSSFKHG VGNTTSARDF LEPLKESTPP APPLPSMQWQ NMQSHLDDEQ DDLHLFSEHH HVFDHKEPGS TISHQPKPPP
1201: FKQNQVIESA FTLKSKQPQS IDTTGQQFAD HAGNGRGINE KEDFLHQIRA KSFNLRRTAP AKPTGNTVPP ASVKVNAILE KANAIRQAVG SDDGEDNWSD
1301: T
0101: HFAYTAGSNW HARIRSEQNH FIYNDLPRFI MDSYEECHAP PRLHLLDKFD PGGPGSCLKR YSDPTFFKRA SVGSDEEYIA KVLKEKKGRK IKKKGSWRRN
0201: GEVSRSASMP NYGSRMQFAY RNLDRRPSWV QSFSAYDTTL KSDIDSRHGS GLTDYVSQTS FSIQPEDGKS ETVSSTIKMQ HNQSFDYSFL EEKSDHTFND
0301: IDKDFSQELT DLVSTSVSWN MKLPDTQESK GSFDSTSQLH LNNTFNHDFP EERREVVYDD IGNIVSEEQA DRCTSSITWN DKTGREKQES RESFSSPSQI
0401: HHDNLPDCAS PVRKGDDEYS DMGNSLTEEQ IGRNLLPVAL SDKMRTAEVE SKEIFYSPLQ MNPSASIEDD SPNEKLWVIS DEESNNFPQG QVVLSSPFSS
0501: SSVKNEQLDL SIQKYDFDES LEALQENLVL DTQVLDIATS ENIQQQSSEP EAEIIQRSIS YESQFDDIES ESDSFMDALN TIESESETDL DCQRKRAMEL
0601: ESSLKTESSL NGTHVNSAEL SDRNLSTPIP EAAARNSPEN RGFGGKTNLV SADSDPGDFS FSNKVKRKEI PENISSGFDE ILSSPQIAGI TLKLDSSIDV
0701: PSSKRSNFLE ASQEEPLVSN HITSSPRNPS SALPVVNKIH CSPSDSEKPP PQLLATPKVK FWTNGGLLGL EPSKPPDGVI NSVGQVYESN QNEEVIASRQ
0801: DPVPSSEKHT GKQDDVQNTS REKADCQNSG QGVAFSIKNI SSRFSAKDLD VKLDKSSNLY QQNCTGKPLH SSSNGYGMTS RTIGTVSPES PILAGQENGK
0901: NSSRILELGN RLLTNGFHGK LSLGWNDKTD SASSFNTGSN EPINDYQQCV GRTIKDFPGR VSPFTSPPSS PPLGHMKISF QPIDSIETTK LKLRFPESNN
1001: DMFPSFQLVP EPSIPLQEVG SDSDDDTFSG SSPDLSDDYL SHQSESNSEQ WESGNFPNLK DQEVYNALHR ISLTESTSTS FENGRTTHQD LHTCSRNHIP
1101: FAESSLEDSP SDNLFDLPVL DTQHSSFKHG VGNTTSARDF LEPLKESTPP APPLPSMQWQ NMQSHLDDEQ DDLHLFSEHH HVFDHKEPGS TISHQPKPPP
1201: FKQNQVIESA FTLKSKQPQS IDTTGQQFAD HAGNGRGINE KEDFLHQIRA KSFNLRRTAP AKPTGNTVPP ASVKVNAILE KANAIRQAVG SDDGEDNWSD
1301: T
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.