Factsheet for Solyc08g016070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088780.2.1
Solyc02g062020.2.1
Solyc02g076840.2.1
Solyc02g083580.2.1
Solyc03g033420.2.1
Solyc03g083030.2.1
Solyc03g114070.2.1
Solyc08g016050.2.1
Solyc08g016060.1.1
Solyc08g016070.1.1
Solyc09g014980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16340.1	Solyc02g076840.2.1	AT1G29170.1	17267444
AT4G16340.1	Solyc09g014980.2.1	AT2G38440.1	17267444
AT4G16340.1	Solyc01g088780.2.1	AT2G44690.1	17267444
AT4G16340.1	Solyc03g083030.2.1	AT3G49290.1	17267444
AT4G16340.1	Solyc08g016050.2.1	AT4G16340.1	17267444
AT4G16340.1	Solyc08g016060.1.1	AT4G16340.1	17267444
AT4G16340.1	Solyc08g016070.1.1	AT4G16340.1	17267444
AT4G16340.1	Solyc02g062020.2.1	AT4G35950.1	17267444
AT4G16340.1	Solyc02g083580.2.1	AT4G35950.1	17267444
AT4G16340.1	Solyc03g033420.2.1	AT4G35950.1	17267444
AT4G16340.1	Solyc03g083030.2.1	AT5G24310.1	17267444
AT4G16340.1	Solyc03g114070.2.1	AT5G62880.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024153_P001	Maize	cytosol	15.64	63.16
Zm00001d012342_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	20.2	53.45
Zm00001d035539_P001	Maize	cytosol	16.78	50.24
GSMUA_Achr10P...	Banana	cytosol	63.35	48.14
Zm00001d042645_P001	Maize	cytosol, nucleus, peroxisome	38.6	40.37
Zm00001d007384_P003	Maize	cytosol, endoplasmic reticulum, peroxisome	16.12	27.65
VIT_11s0016g00100.t01	Wine grape	mitochondrion	72.96	24.26
KRH43411	Soybean	endoplasmic reticulum	68.73	23.0
KRH13046	Soybean	endoplasmic reticulum	67.92	22.72
AT4G16340.1	Thale cress	cytosol	65.8	22.08
CDY32235	Canola	cytosol	64.98	21.88
KXG39465	Sorghum	cytosol	63.52	21.21
HORVU4Hr1G051250.3	Barley	cytosol	62.87	21.05
TraesCS4A01G131100.1	Wheat	cytosol	62.38	20.87
TraesCS4B01G173500.4	Wheat	cytosol	62.38	20.87
Zm00001d029004_P004	Maize	cytosol	63.35	20.86
TraesCS4D01G175600.4	Wheat	cytosol	62.22	20.82
CDY34451	Canola	endoplasmic reticulum	64.01	20.82
Zm00001d047540_P001	Maize	cytosol, mitochondrion	62.54	20.8
Zm00001d035534_P003	Maize	cytosol	15.31	19.87
Bra038448.1-P	Field mustard	cytosol	64.82	19.21
Zm00001d046856_P002	Maize	endoplasmic reticulum, nucleus, peroxisome	15.47	17.82
Zm00001d038664_P001	Maize	cytosol, nucleus, plastid	13.84	15.89
TraesCS5A01G195400.1	Wheat	cytosol	1.47	6.62
TraesCS5D01G127700.1	Wheat	cytosol	0.98	4.2
Solyc08g016060.1.1	Tomato	extracellular	0.81	1.75
Solyc08g016050.2.1	Tomato	nucleus	0.98	0.66
Os03t0328000-01	Rice	plasma membrane	0.0	0.0
GSMUA_Achr10P...	Banana	extracellular	0.0	0.0

Protein Annotations

MapMan:35.1	InterPro:DHR-1_domain	InterPro:DOCK	GO:GO:0003674	GO:GO:0005085	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0065009	InterPro:IPR027007	UniProt:K4CJD2
PFAM:PF14429	PFscan:PS51650	PANTHER:PTHR23317	PANTHER:PTHR23317:SF76	EnsemblPlantsGene:Solyc08g016070.1	EnsemblPlants:Solyc08g016070.1.1
UniParc:UPI000276B6A4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:6638224..6652433

Molecular Weight (calculated)

69573.0 Da

IEP (calculated)

7.018

GRAVY (calculated)

-0.401

Length

614 amino acids

Sequence
(BLAST)

001: MRTSMVTMKA SARLHFRVKY MRVLILILKQ MHLANARRPK IEDSVDGEIP STSGAQLSED NFSDLSNAKV SKHFGESPLP TYEPVFDWEN ERSLIFGQRI
101: PEAHMSQYTS GLKIAVKVLS LSFQAGLVEP FHGTICLYNR ERREKLSEDF IFHVLPTEMQ EASSSYERRC IFHLDAPSAS ICLLIQLEKP ATEEGGVSPS
201: VYSRKEPVHL TEREKQKLQV WSRIMPYRES FSWAIIPLFD SNIASVGGSA SPSSPLAPSV SASSSQEGIT EPLSKITADG KLGYSNGNSI VVEVSNLNKV
301: KEGYTEESLQ DPKRKVHKPV KGVLKLEIEK LPASSTETEN ALDSGSLIYD SLDHGDHLND STSMKFPTNG TFSKSKSSEM KELVRNGSVA HENVENTADD
401: FEAFDFRTTT RNEPFLQLFH CLYVYPLTVS MSRKRNMFIR VELRRDDTDI RKPPLEAMHP REPGVPLQKW SHTQVAVGAR VASYHDEIKV SLPVIWTPSH
501: HLLFTFYHVD LQTKLEAPKP VVIGYASLPL STHAQFRSEI SLPIMKELVP HYLQESGKER LDYLEDGKNI FKLRLRLCSS LYPVSERIRD FFLEYDRHTL
601: RTSPPWGSEL LEVI

Best Arabidopsis Sequence Match ( AT4G16340.2 )
(BLAST)

0001: MENNNLGLRF RKLPRQPLAL PKLDPLLDEN LEQWPHLNQL VQCYGTEWVK DVNKYGHYEN IRPDSFQTQI FEGPDTDTET EIRLASARSA TIEEDVASIS
0101: GRPFSDPGSS KHFGQPPLPA YEPAFDWENE RAMIFGQRTP ESPAASYSSG LKISVRVLSL AFQSGLVEPF FGSIALYNQE RKEKLSEDFY FQIQPTEMQD
0201: AKLSSENRGV FYLDAPSASV CLLIQLEKTA TEEGGVTSSV YSRKEPVHLT EREKQKLQVW SRIMPYRESF AWAVVPLFDN NLTTNTGESA SPSSPLAPSM
0301: TASSSHDGVY EPIAKITSDG KQGYSGGSSV VVEISNLNKV KESYSEESIQ DPKRKVHKPV KGVLRLEIEK HRNGHGDFED LSENGSIIND SLDPTDRLSD
0401: LTLMKCPSSS SGGPRNGCSK WNSEDAKDVS RNLTSSCGTP DLNCYHAFDF CSTTRNEPFL HLFHCLYVYP VAVTLSRKRN PFIRVELRKD DTDIRKQPLE
0501: AIYPREPGVS LQKWVHTQVA VGARAASYHD EIKVSLPATW TPSHHLLFTF FHVDLQTKLE APRPVVVGYA SLPLSTYIHS RSDISLPVMR ELVPHYLQES
0601: TKERLDYLED GKNIFKLRLR LCSSLYPTNE RVRDFCLEYD RHTLQTRPPW GSELLQAINS LKHVDSTALL QFLYPILNML LHLIGNGGET LQVAAFRAMV
0701: DILTRVQQVS FDDADRNRFL VTYVDYSFDD FGGNQPPVYP GLATVWGSLA RSKAKGYRVG PVYDDVLSMA WFFLELIVKS MALEQARLYD HNLPTGEDVP
0801: PMQLKESVFR CIMQLFDCLL TEVHERCKKG LSLAKRLNSS LAFFCYDLLY IIEPCQVYEL VSLYMDKFSG VCQSVLHECK LTFLQIISDH DLFVEMPGRD
0901: PSDRNYLSSI LIQELFLSLD HDELPLRAKG ARILVILLCK HEFDARYQKA EDKLYIAQLY FPFVGQILDE MPVFYNLNAT EKREVLIGVL QIVRNLDDTS
1001: LVKAWQQSIA RTRLYFKLME ECLILFEHKK AADSILGGNN SRGPVSEGAG SPKYSERLSP AINNYLSEAS RQEVRLEGTP DNGYLWQRVN SQLASPSQPY
1101: SLREALAQAQ SSRIGASAQA LRESLHPILR QKLELWEENV SATVSLQVLE ITENFSSMAA SHNIATDYGK LDCITTILTS FFSRNQSLAF WKAFFPIFNR
1201: IFDLHGATLM ARENDRFLKQ IAFHLLRLAV YRNDSVRKRA VIGLQILVKS SLYFMQTARL RALLTITLSE LMSDVQVTHM KSDNTLEESG EARRLQQSLS
1301: EMADEAKSVN LLRECGLPDD TLLIIPEKFT ENRWSWAEVK HLSDSLVLAL DASLGHALLG SVMAMDRYAA AESFYKLGMA FAPVPDLHIM WLLHLCDAHQ
1401: EMQSWAEAAQ CAVAVAGVIM QALVARNDGV WSKDHVSALR KICPMVSGEF TTEASAAEVE GYGASKLTVD SAVKYLQLAN KLFSQAELYH FCASILELVI
1501: PVYKSRKAYG QLAKCHTLLT NIYESILDQE SNPIPFIDAT YYRVGFYGEK FGKLDRKEYV YREPRDVRLG DIMEKLSHIY ESRMDSNHIL HIIPDSRQVK
1601: AEDLQAGVCY LQITAVDAVM EDEDLGSRRE RIFSLSTGSV RARVFDRFLF DTPFTKNGKT QGGLEDQWKR RTVLQTEGSF PALVNRLLVT KSESLEFSPV
1701: ENAIGMIETR TTALRNELEE PRSSDGDHLP RLQSLQRILQ GSVAVQVNSG VLSVCTAFLS GEPATRLRSQ ELQQLIAALL EFMAVCKRAI RVHFRLIGEE
1801: DQEFHTQLVN GFQSLTAELS HYIPAILSEL

Arabidopsis Description

SPK1Guanine nucleotide exchange factor SPIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8SAB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.