Factsheet for Solyc02g083580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010080.2.1
Solyc08g016050.2.1
Solyc08g016060.1.1
Solyc08g016070.1.1
Solyc08g068000.1.1
Solyc09g014980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51300.1	Solyc01g010080.2.1	AT4G32650.1	15299147
AT3G51300.1	Solyc08g068000.1.1	AT4G32650.1	15299147
AT4G35950.1	Solyc09g014980.2.1	AT2G38440.1	17267444
AT4G35950.1	Solyc08g016050.2.1	AT4G16340.1	17267444
AT4G35950.1	Solyc08g016060.1.1	AT4G16340.1	17267444
AT4G35950.1	Solyc08g016070.1.1	AT4G16340.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009227	Potato	cytosol	99.49	99.49
Bra040869.1-P	Field mustard	cytosol	85.28	96.0
Solyc02g062020.2.1	Tomato	plastid	95.94	95.94
AT3G51300.1	Thale cress	cytosol, plastid	95.43	95.43
KRH76629	Soybean	cytosol	94.92	94.92
AT2G17800.1	Thale cress	cytosol	94.92	94.92
KRH28825	Soybean	cytosol	94.92	94.92
Bra002093.1-P	Field mustard	cytosol	94.42	94.42
AT4G35950.1	Thale cress	cytosol	93.91	93.91
Bra011651.1-P	Field mustard	cytosol	93.91	93.91
KRH69754	Soybean	cytosol	93.4	93.4
KRH08028	Soybean	cytosol	93.4	93.4
Bra037248.1-P	Field mustard	cytosol	93.4	93.4
Bra017740.1-P	Field mustard	cytosol	93.4	93.4
Bra012858.1-P	Field mustard	cytosol, plastid	93.4	93.4
Solyc01g111560.2.1	Tomato	cytosol, nucleus, plastid	93.4	92.93
Bra036819.1-P	Field mustard	cytosol, plastid	92.39	92.39
Bra038892.1-P	Field mustard	cytosol, plastid	91.88	91.88
VIT_04s0023g03860.t01	Wine grape	cytosol	89.85	90.31
Solyc03g033420.2.1	Tomato	cytosol	83.76	83.76
Solyc02g077400.2.1	Tomato	cytosol, plastid	83.25	83.25
Solyc03g114070.2.1	Tomato	cytosol	82.23	77.14
Solyc01g088780.2.1	Tomato	cytosol	79.7	75.48
Solyc07g020800.2.1	Tomato	cytosol	77.67	72.86
Solyc12g007210.1.1	Tomato	cytosol	75.13	70.14
Solyc10g055520.1.1	Tomato	cytosol	49.24	61.01

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
InterPro:IPR003578	UniProt:K4BAM6	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420
PANTHER:PTHR24072	PANTHER:PTHR24072:SF179	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	EnsemblPlantsGene:Solyc02g083580.2	EnsemblPlants:Solyc02g083580.2.1	TIGRFAMs:TIGR00231
UniParc:UPI00027686AF	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:46932950..46936218

Molecular Weight (calculated)

21503.9 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.095

Length

197 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVAKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFV DHPGAVPITT AQGEELRKTI GAPAYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKGKS QKACSIL

Best Arabidopsis Sequence Match ( AT3G51300.1 )
(BLAST)

001: MSASRFVKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELRKQI GAPTYIECSS KTQENVKAVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC11Rac-like GTP-binding protein ARAC11 [Source:UniProtKB/Swiss-Prot;Acc:P92978]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.