Factsheet for Solyc01g010080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g104030.2.1
Solyc02g062020.2.1
Solyc02g067790.2.1
Solyc02g083580.2.1
Solyc03g033420.2.1
Solyc05g017930.1.1
Solyc10g024360.1.1
Solyc12g006850.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32650.1	Solyc05g017930.1.1	AT2G26650.1	12678562
AT4G32650.1	Solyc12g006850.1.1	AT2G26650.1	12678562
AT4G32650.1	Solyc05g017930.1.1	AT2G26650.1	15299147
AT4G32650.1	Solyc12g006850.1.1	AT2G26650.1	15299147
AT4G32650.1	Solyc02g062020.2.1	AT3G51300.1	15299147
AT4G32650.1	Solyc02g083580.2.1	AT3G51300.1	15299147
AT4G32650.1	Solyc03g033420.2.1	AT3G51300.1	15299147
AT4G32650.1	Solyc01g104030.2.1	AT4G22200.1	12678562
AT4G32650.1	Solyc10g024360.1.1	AT4G22200.1	12678562
AT4G32650.1	Solyc02g067790.2.1	AT5G14570.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065964	Potato	cytosol, plastid	96.82	96.36
Solyc08g068000.1.1	Tomato	plasma membrane	73.09	71.38
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	70.22	69.89
KRH61886	Soybean	plasma membrane	61.31	61.6
GSMUA_Achr1P05260_001	Banana	plasma membrane	60.19	59.72
GSMUA_Achr5P09770_001	Banana	plasma membrane	61.78	59.42
AT4G32650.1	Thale cress	plastid	61.31	58.16
KRH52547	Soybean	cytosol	53.34	56.4
HORVU3Hr1G068040.1	Barley	plasma membrane	38.22	56.07
Os01t0718700-00	Rice	endoplasmic reticulum, plasma membrane	33.12	55.76
Os04t0117500-00	Rice	plasma membrane	23.73	52.1
TraesCS3D01G246300.1	Wheat	plastid	47.13	49.75
TraesCS3A01G245200.1	Wheat	mitochondrion	46.82	48.92
Os06t0254200-00	Rice	plasma membrane, plastid	46.66	48.03
OQU87429	Sorghum	mitochondrion	46.97	47.2
Zm00001d011723_P002	Maize	cytosol, plasma membrane, plastid	46.18	45.31
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	10.19	44.76
Zm00001d016987_P001	Maize	plasma membrane	41.08	43.8
Zm00001d011729_P002	Maize	cytosol	44.11	43.76
Solyc09g005220.1.1	Tomato	cytosol	19.27	42.31
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	40.45	42.26
TraesCS3B01G274500.1	Wheat	plastid	42.68	41.42
Solyc02g070530.2.1	Tomato	nucleus	44.11	40.26
Solyc08g016500.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	42.83	39.39
Solyc12g006850.1.1	Tomato	plasma membrane	47.45	33.75
Solyc03g058900.1.1	Tomato	cytosol	10.19	32.82
Solyc08g066990.2.1	Tomato	plasma membrane	42.68	31.09
Solyc01g104030.2.1	Tomato	cytosol	40.45	30.35
Solyc10g024360.1.1	Tomato	cytosol	39.81	29.73
Solyc05g051220.2.1	Tomato	cytosol	33.44	25.49
Solyc11g011500.1.1	Tomato	cytosol	32.01	24.25
Solyc03g097940.2.1	Tomato	plasma membrane	27.23	22.01
CDY61287	Canola	plasma membrane	16.4	19.43
Bra021279.1-P	Field mustard	nucleus	15.76	17.31
CDY10020	Canola	cytosol	6.37	11.73

Protein Annotations

Gene3D:1.10.287.70	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005249	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR014710
InterPro:IPR021789	InterPro:Ion_trans_dom	UniProt:K4ATK3	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PRINTS:PR01463	PFscan:PS50042	PFscan:PS51490	PANTHER:PTHR10217
PANTHER:PTHR10217:SF537	InterPro:RmlC-like_jellyroll	SMART:SM00100	SUPFAM:SSF51206	SUPFAM:SSF81324	EnsemblPlantsGene:Solyc01g010080.2
EnsemblPlants:Solyc01g010080.2.1	TMHMM:TMhelix	UniParc:UPI0002761902	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg

Description

No Description!

Coordinates

chr1:+:4800229..4810748

Molecular Weight (calculated)

72020.3 Da

IEP (calculated)

9.085

GRAVY (calculated)

-0.015

Length

628 amino acids

Sequence
(BLAST)

001: MSETTRSPMP LSETRSPMPL LFRRHSSGEI RNLASLSSSL LPAFGTVMGE SSVRLKRFLI APYDRRYRLW QAFLVVLVVY SAWSSPFELA FSKASTGALL
101: PVDLVVDAFF AIDIILTFFV AYLDKSTYLL VEEHKKIALR YVTHLWFPMD VASTLPFQAI YRVVTGKTSR GQVFGFLNLL RLWRLRRVSK FFSRLEKDTR
201: FSYFWTRYFK LICVTLFAVH SAGCFYYWLA TRYHNSESTW MGANIPDFKS RSIWLGYTYS MYWSIVTLST VGYGDLHAVN IEEKIFTIFY MLFNIGLTAY
301: LIGNMTNLIV HTAVRTFVMR DAINEILRYA KKNRLPEGLR EQMLAHLTLK FKTAELQQEQ VLEDLPKAIR SSILQQLFRT TLQNSHLFKG VSDDFIVQLV
401: SEIKAEYFPP KVDIVIQNEI PTDFYIIVSG AVDVVTYKNG MEQFLSKLGS QQMFGEIGVI FNIPQPFTVR TKRLSQVVRI SHHHFKQLVQ PLHEDGKIIH
501: TNFIQHLKGL KNEELAEMPL ISEFLDDLIS EEASMNEAGA QDQQENELSA TTSSLSKTPS TRVIIHGYHP DHKPKSGGKL IHLPDSIENL HSIAESKFGR
601: RGSTILMADG SQVEDLAALR EDDHLYIF

Best Arabidopsis Sequence Match ( AT4G32650.3 )
(BLAST)

001: MSTTTTEARS PLPLLLRRGR SSTALSASTA EARSPLSILQ FRRRSSKDVR NITSVSSSLL PAFGTFIEDD NPSSKPFIVL HFDRRYRLWE LFLVILVGYS
101: AWASLFELAF EKAAEGALLT IDLVVDFFFA VDIILTFFVS YLDNTTYLNV TDHKLIAKRY LKSVAFVMDV ASTLPIQFIY KTITGDVGRG QAFGFLNLLR
201: LWRLRRVAEL FKRLEKDAHF NYFVIRVIKL LCVTIFWIHL AGCILYWIAY HYPRPTDTWI GSQVEDFKER SVWLGYTYSM YWSIVTLTTV GYGDLHAVNS
301: REKTFNMFYM LFNIGLTSYI IGIMTNLVVH GALRTFAMRS AINDILRYTS KNRLPDTMRE QMLAHMQLKF KTAELRQEEV LQDLPKAIRS SINQHLFRSI
401: IEEAYLFKGF PEGLLVQLVS QIQAEYFPPK MEIILQNEIP TDFYVIVSGG VDIIASKGVS EQVLAKLGPG SMAGEIGVVF NIPQPFTVRT RRLSQVIRIG
501: HHKFKEMVQS DNDVDAKMII ANFMTYLKGL NDELKKEIPF LRDLLDDADA QVQETVQSEE TPQSNDEEIV TVSRHENGQK ERRREGVPKR VIIHGQAPPN
601: QDNKNNGDSN GRLIILPDSI QLLFDLAEKK LGKRGSTIAM ADGAHVEQID ALRENDHLYI F

Arabidopsis Description

KAT3KC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UVX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.