Factsheet for Solyc03g097940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	64.22	68.26
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	67.44	62.68
Solyc05g051220.2.1	Tomato	cytosol	63.58	59.95
Solyc11g011500.1.1	Tomato	cytosol	63.45	59.47
HORVU7Hr1G040990.20	Barley	endoplasmic reticulum, plasma membrane	60.36	58.92
HORVU7Hr1G040880.7	Barley	cytosol, plasma membrane	57.79	58.01
KRH60563	Soybean	mitochondrion, plasma membrane	57.53	57.38
TraesCS7B01G106800.1	Wheat	cytosol	43.11	56.97
TraesCS7D01G203200.1	Wheat	cytosol, plasma membrane, vacuole	60.1	56.81
KXG19708	Sorghum	cytosol	62.29	56.67
TraesCS7B01G106900.1	Wheat	cytosol, plasma membrane, vacuole	60.49	56.29
TraesCS7A01G200200.1	Wheat	cytosol, plasma membrane, vacuole	60.36	55.97
GSMUA_Achr8P22960_001	Banana	nucleus, peroxisome, plasma membrane	21.49	55.67
Os06t0250600-01	Rice	cytosol	61.26	55.48
Zm00001d037289_P002	Maize	cytosol	62.16	55.39
TraesCS7A01G200100.1	Wheat	cytosol	58.94	55.05
TraesCS7D01G202900.1	Wheat	plasma membrane	57.66	54.77
TraesCS7D01G203100.1	Wheat	cytosol	58.3	54.64
Zm00001d044717_P001	Maize	cytosol	61.52	54.38
TraesCS7B01G106600.1	Wheat	cytosol	50.84	53.81
TraesCS7A01G199900.1	Wheat	cytosol	58.3	53.36
HORVU7Hr1G040970.5	Barley	cytosol	58.82	47.9
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	5.15	27.97
Solyc08g066990.2.1	Tomato	plasma membrane	30.5	27.49
Solyc01g010080.2.1	Tomato	plastid	22.01	27.23
Solyc02g070530.2.1	Tomato	nucleus	23.55	26.6
Solyc08g068000.1.1	Tomato	plasma membrane	21.88	26.44
Solyc12g006850.1.1	Tomato	plasma membrane	29.99	26.39
Solyc08g016500.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	22.78	25.92
Solyc01g104030.2.1	Tomato	cytosol	27.67	25.69
Solyc10g024360.1.1	Tomato	cytosol	27.16	25.09
Solyc09g005220.1.1	Tomato	cytosol	8.62	23.43
Solyc03g058900.1.1	Tomato	cytosol	5.79	23.08

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244
GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085
GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789
InterPro:IPR036770	InterPro:Ion_trans_dom	UniProt:K4BJL1	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PFAM:PF13637	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF514	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	EnsemblPlantsGene:Solyc03g097940.2
EnsemblPlants:Solyc03g097940.2.1	TMHMM:TMhelix	UniParc:UPI0002768592	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg

Description

No Description!

Coordinates

chr3:+:60321741..60332404

Molecular Weight (calculated)

88255.5 Da

IEP (calculated)

5.598

GRAVY (calculated)

-0.005

Length

777 amino acids

Sequence
(BLAST)

001: MERVVVVEAG DAEITDLLFA LIIGSNQWYI LWTQFILIWA VYSSFFTPLE FGFFRGLPEN LFLLDIAGQI AFLIDIVVLF FVVYRDSHSH CMIYDRKLIA
101: IRYLKSRFLL DLLGCFPWDA IYKASGRKEP VRYILWIRLS RALRVTELFE RLEKDIRLNY LFTRIVKLFV VELYCTHTAA CFFYYLATTL PPWEEGYTWI
201: GSLKMGDYNY TDFRDIDLWT RYITSLYFAV VTMATVGYGE IHAVNVREMI FVMIYVSVDM ILGAYLLGNM AALIVKGSKT ERFRDKMADL IKYMNRNKLG
301: KSLSKEIKDH VRLQYESRYN ESSVLQDIPA SIRAKIARKL YEPYIRGVPL FRGCSDEFIE QIAIKVHEEF FLPGEVILEQ GSMADQLYFV CHGKVEELTK
401: SEENETEESL LDLHTYNSVG EISVLCNIPV PYTVQVSELS RLLRIDKQSL VEILGIYFSD GRVIINNLLE GRESSLRSKI LESDITLNIA KHESELAMRL
501: NCAAHDGDLY RLSRLIGAGA EPNRTDYDGR SPLHLAASRG HGDITAFLIQ RGVEINGRDN FGYTPLLEAV KNSHDHVASL LVEAGALLGI DNDGTCLCEA
601: VARRDVEYLR RLLANGINPN SKNYDFRTPL HLAASEGLYP ISVLLLEAGA SVFAVDRWGK SPLDEARVGG NKNLIKLLED AKGSQLSEFS PSFGRSQDEG
701: QGVKCRVFAS EPKELKDERR KGVVLWVPQS LDELINTAKE QLRVSSANCV VSEDGAKILD TNMISDGQKL FLVSEYT

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.