Factsheet for VIT_11s0016g05810.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	84.09	96.17
VIT_14s0006g00230.t01	Wine grape	extracellular	11.84	70.71
Solyc03g097940.2.1	Tomato	plasma membrane	62.68	67.44
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	62.8	63.95
HORVU7Hr1G040990.20	Barley	endoplasmic reticulum, plasma membrane	57.06	59.92
KRH60563	Soybean	mitochondrion, plasma membrane	55.14	59.18
GSMUA_Achr8P22960_001	Banana	nucleus, peroxisome, plasma membrane	21.17	59.0
TraesCS7D01G203200.1	Wheat	cytosol, plasma membrane, vacuole	57.78	58.76
Os06t0250600-01	Rice	cytosol	59.93	58.39
TraesCS7B01G106800.1	Wheat	cytosol	41.03	58.33
HORVU7Hr1G040880.7	Barley	cytosol, plasma membrane	53.95	58.27
TraesCS7B01G106900.1	Wheat	cytosol, plasma membrane, vacuole	58.13	58.2
TraesCS7A01G200200.1	Wheat	cytosol, plasma membrane, vacuole	58.13	58.0
KXG19708	Sorghum	cytosol	59.09	57.85
TraesCS7A01G200100.1	Wheat	cytosol	57.42	57.69
Zm00001d037289_P002	Maize	cytosol	59.93	57.45
TraesCS7D01G203100.1	Wheat	cytosol	56.94	57.42
TraesCS7D01G202900.1	Wheat	plasma membrane	55.74	56.97
Zm00001d044717_P001	Maize	cytosol	59.33	56.43
TraesCS7B01G106600.1	Wheat	cytosol	48.8	55.59
TraesCS7A01G199900.1	Wheat	cytosol	55.02	54.18
VIT_18s0089g01300.t01	Wine grape	plasma membrane	46.65	53.42
HORVU7Hr1G040970.5	Barley	cytosol	56.7	49.69
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	28.11	28.01
VIT_10s0003g03270.t01	Wine grape	plasma membrane	26.32	27.81
VIT_11s0016g04750.t01	Wine grape	plasma membrane	28.59	27.41
VIT_04s0008g04990.t01	Wine grape	mitochondrion	29.19	27.17
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	19.74	26.15

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:100255971	wikigene:100255971	EntrezGene:100257630	wikigene:100257630
Gene3D:2.60.120.10	MapMan:24.3.2.2	EMBL:AM431159	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ProteinID:CAN69248	ProteinID:CAN69248.1	ProteinID:CBI28247	ProteinID:CBI28247.3	UniProt:D7TC62	EMBL:FN595756
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595
InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom
InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	EntrezGene:LOC100255971	wikigene:LOC100255971	EntrezGene:LOC100257630	wikigene:LOC100257630
PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PFAM:PF13857	PRINTS:PR01415
PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217
PANTHER:PTHR10217:SF514	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206
SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0001BE33A7	ArrayExpress:VIT_11s0016g05810	EnsemblPlantsGene:VIT_11s0016g05810	EnsemblPlants:VIT_11s0016g05810.t01
RefSeq:XP_002279184	RefSeq:XP_002279184.1	RefSeq:XP_002282398	RefSeq:XP_002282398.2	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:5309080..5325863

Molecular Weight (calculated)

95198.9 Da

IEP (calculated)

6.750

GRAVY (calculated)

-0.121

Length

836 amino acids

Sequence
(BLAST)

001: MMSMHGGDKR GGSSTRAGNE SEEEDYEIEI DGLQDKASWR TWFRSLVCRQ QTVPDSARSR MTRIVRNAAA TANENRGRFV IRPDNWWYMV WTQFILIWAV
101: YSSFFTPMEF GFFRGLPENL FLLDIAGQLA FLVDIVVRFF VAFRDTQSYT TVDSHKRIAL RYLKSRFVVD FLGCLPLDAI YRFCGRKEPV RYLLWIRLSR
201: ALRVTEFFEK LEKDIRINYL FTRIVKLLVV ELYCTHAAAC IFYYLATTMP ASQEGYTWIG SLTMGDYSYS HFRDIDLWKR YFTSLYFAIV TMATVGSGDI
301: HAVNVREMLF VMAYVSFDMI LGAYLLGNMT ALIVKGSKTE KFRDRMAELI SYMNRNKLGR QISNEIKHHV RSQHETSYTE AAFLQDIPVS IRAKISQKLY
401: GPYIKEVSLF KGCSSGFLKQ IATRVHEEIF LPGEVILEEE NMVDQLYIVC NGKLKRVGSN EDEIEGPLMH LQTNDSFGEI PLLCNTPLAY TVQVVELCRL
501: VRLDKQSFIN ILEIYFSDGQ IILNNLLEGK GSNLRNKILE SDITLYIGKH EAEVAMRVNC AAYNGDLYQL RRLIEAGADP NKTDYDGRSP LHFAASKGYE
601: DITDFLIELR VNIHLSDNHG NTPLLEAIKN GHDGVTSLLV KAGALLTVED AGGCLCMTVV RRDLNFLKRL LANGINPNAK NYDSRTPLHL AASEGLYSMT
701: NLLLEAGASV LAKDRWGNTP LDEARIGGNK NLIKLLEEAM SAQLSEFSSC SQEIRADKMR QRKCTVFPFH PWDSKEERKQ GVVLWIPKTI EELIETAMDQ
801: LKCSSGSCIL SENGAKITNI DMISDEEKLF LVAETI

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.