Factsheet for VIT_18s0089g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g00230.t01	Wine grape	extracellular	13.01	67.86
GSMUA_Achr3P16730_001	Banana	plasma membrane	65.07	65.79
Os04t0445000-01	Rice	cytosol	40.82	65.64
EES10868	Sorghum	cytosol	63.7	64.14
TraesCS2A01G312800.1	Wheat	plasma membrane	61.51	62.1
TraesCS2B01G329800.1	Wheat	plasma membrane	61.51	62.1
TraesCS2D01G311300.1	Wheat	plasma membrane	61.51	59.08
Zm00001d003555_P001	Maize	plasma membrane	59.86	58.66
HORVU2Hr1G077680.12	Barley	cytosol	60.82	57.89
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	58.22	51.77
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	50.82	50.75
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	53.42	46.65
VIT_11s0016g04750.t01	Wine grape	plasma membrane	31.78	26.61
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	22.74	26.31
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	29.73	25.86
VIT_04s0008g04990.t01	Wine grape	mitochondrion	30.41	24.72
VIT_10s0003g03270.t01	Wine grape	plasma membrane	26.3	24.27

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CCB44097	ProteinID:CCB44097.1	UniProt:F6GVW2	EMBL:FN594956
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005215	GO:GO:0005216	GO:GO:0005249
GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016705	GO:GO:0020037
GO:GO:0034220	GO:GO:0042391	GO:GO:0046872	GO:GO:0055085	GO:GO:0055114	GO:GO:0071805
InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR036770	InterPro:Ion_trans_dom
InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520	PFAM:PF12796	PFAM:PF13637	PRINTS:PR01415
PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478
InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324
TMHMM:TMhelix	UniParc:UPI0002108F67	ArrayExpress:VIT_18s0089g01300	EnsemblPlantsGene:VIT_18s0089g01300	EnsemblPlants:VIT_18s0089g01300.t01	InterPro:cNMP-bd-like
InterPro:cNMP-bd_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:29203043..29230849

Molecular Weight (calculated)

83379.4 Da

IEP (calculated)

7.219

GRAVY (calculated)

0.038

Length

730 amino acids

Sequence
(BLAST)

001: MGRRRPEEYE LNEVEDTITG SVGSRMRLVS SELGLRKTAS TLCARGGFVI DPRSRFCNCW QQIIFLWSIF SSFFTPLEFC FFRGLPDHLV SLESAQIIFL
101: VDVVLQFFVA YKDLHSYNMV YNRKSIAIRY AKGSFLVDFL GCVPWDAIYK ASGRREVMRY MIWIRLYRAR KVAQFFKRME KDVRINYLFT RIVKLITVEL
201: YCTHTAACIF YYLATTLPPA EEGYTWIGSL TMGDYKYINF REIDFWTRYI TSLYFAIVTM ATVGYGDIHA VNLREMIFIM IFVSFDMILG AYLIGNMTAL
301: TVKGSKTERF RDKMTDLIKY MNQNKLNKDI RSQIKDHLSL QYENTYTKAS VLDDIPIALR SKISENLYIE MVQKVPLFKG CCDEFLKQIV MKLNEEFFLP
401: GEVILEQSSA VDQVYIVSHG RLEEVAIGEN GSEELIANLE PCSIFGEVAV LCNIPQPYTV RVCELCRLLR IEKQSLNGIL QLYFTDSRQI LNNLLKGKDT
501: DLRIKQLESD IAYLITKQYS ELALRVNSAA YHGDLYHLKD LIKSGADPCK TDYDGRCALH LAAAKGYEEI VRFLIQHGAN TNCIGDQLDN PYRVTVLVAC
601: CSFVQFPCFA DNFGNSPLFE AVKAGHDRTA LLLIEDGATL NLEDAGWYLC KAVMGSNIDL LKRLLENGVD PNSRNYDLRT PLHFAAAEGL HLVANILIKF
701: GADVLSKDRP LARSEIVEPS CSLRALRAIN

Best Arabidopsis Sequence Match ( AT3G02850.2 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKG SFIGI

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.