Factsheet for VIT_04s0008g04510.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03860.t01
VIT_11s0016g04750.t01
VIT_12s0034g02240.t01
VIT_14s0066g00850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32650.1	VIT_11s0016g04750.t01	AT2G26650.1	12678562
AT4G32650.1	VIT_11s0016g04750.t01	AT2G26650.1	15299147
AT4G32650.1	VIT_04s0023g03860.t01	AT3G51300.1	15299147
AT4G32650.1	VIT_12s0034g02240.t01	AT4G22200.1	12678562
AT4G32650.1	VIT_14s0066g00850.t01	AT5G14570.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010080.2.1	Tomato	plastid	69.89	70.22
PGSC0003DMT400037608	Potato	plastid	69.1	69.98
PGSC0003DMT400065964	Potato	cytosol, plastid	69.57	69.57
Solyc08g068000.1.1	Tomato	plasma membrane	67.51	66.25
KRH61886	Soybean	plasma membrane	64.18	64.8
GSMUA_Achr1P05260_001	Banana	plasma membrane	62.28	62.09
GSMUA_Achr5P09770_001	Banana	plasma membrane	63.55	61.41
KRH52547	Soybean	cytosol	57.21	60.77
AT4G32650.1	Thale cress	plastid	61.17	58.31
Os01t0718700-00	Rice	endoplasmic reticulum, plasma membrane	34.07	57.64
HORVU3Hr1G068040.1	Barley	plasma membrane	38.83	57.24
Os04t0117500-00	Rice	plasma membrane	23.3	51.4
TraesCS3D01G246300.1	Wheat	plastid	48.34	51.26
TraesCS3A01G245200.1	Wheat	mitochondrion	48.34	50.75
Os06t0254200-00	Rice	plasma membrane, plastid	47.23	48.85
Zm00001d011723_P002	Maize	cytosol, plasma membrane, plastid	47.23	46.56
OQU87429	Sorghum	mitochondrion	45.64	46.08
Zm00001d011729_P002	Maize	cytosol	45.01	44.87
Zm00001d016987_P001	Maize	plasma membrane	40.73	43.63
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	41.05	43.09
TraesCS3B01G274500.1	Wheat	plastid	43.9	42.81
VIT_10s0003g03270.t01	Wine grape	plasma membrane	42.63	34.01
VIT_14s0006g00230.t01	Wine grape	extracellular	7.45	33.57
VIT_11s0016g04750.t01	Wine grape	plasma membrane	45.8	33.14
VIT_04s0008g04990.t01	Wine grape	mitochondrion	44.06	30.96
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	40.57	30.51
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	30.11	23.14
VIT_18s0089g01300.t01	Wine grape	plasma membrane	26.31	22.74
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	25.2	21.75
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	26.15	19.74
CDY61287	Canola	plasma membrane	16.01	19.06
Bra021279.1-P	Field mustard	nucleus	15.37	16.96
CDY10020	Canola	cytosol	6.81	12.61

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	EntrezGene:100242379	wikigene:100242379	Gene3D:2.60.120.10	MapMan:24.3.2.2
ProteinID:CBI20953	ProteinID:CBI20953.3	UniProt:D7SUK4	EMBL:FN595231	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005249	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595
InterPro:IPR014710	InterPro:IPR021789	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	EntrezGene:LOC100242379
wikigene:LOC100242379	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PRINTS:PR01463	PFscan:PS50042
PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF537	InterPro:RmlC-like_jellyroll	SMART:SM00100	SUPFAM:SSF51206
SUPFAM:SSF81324	TIGR:TC65725	TMHMM:TMhelix	UniParc:UPI00015C8E6F	ArrayExpress:VIT_04s0008g04510	EnsemblPlantsGene:VIT_04s0008g04510
EnsemblPlants:VIT_04s0008g04510.t01	unigene:Vvi.23838	RefSeq:XP_003631831	RefSeq:XP_003631831.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:3875392..3885826

Molecular Weight (calculated)

72533.7 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.105

Length

631 amino acids

Sequence
(BLAST)

001: MSSETRSPLP LLLRRHTSSE SKNLATVSSS LLPAFGTVID EGYLQLKKYT IAPYDRRYRW WQTFLVILVI YSAWASPFEL AFKKVATGSL MPVDLTVDAF
101: FAADIILTFF VAYLDKSTYL LVDDHKKIAI RYATKLWLPM DIASTLPFQS MYRVITGKMH QGDIFGFLNL LRLWRLRRVS ELFTRLEKDT RFSYFWTRYC
201: KLICVTLFAV HSAGCFYYWL AIHHKTSKKT WIGAQITDFE HRSIWLGYTY SIYWSIVTLT TVGYGDLHAE NTGEKVFNIL YMLFNIGLTA YLIGNMTNLI
301: VHSAIRTFAM RDAINEILRY ASKNRLPEGL KEQMLAHMQL KFKTAELQQE EVLEDLPKAI RSSIAQHLFH KTVEKAYLFK GISDDLVTQL VSEIKAEYFP
401: PKVDIILQNE IPTDFYIIAA GAMDVLIYKN GTEQFLTKQG PAEMAGEIGV IFNIPQPFTV RTKRLSQVIR ISHHHFKQIV QQQNEDGKTI ILNFVQYLRS
501: LKQELQQEIP FLTELLGDMN IEHVESSQEP QNTETLRSDN DEGAHIEGTP TSYPLSSTLP MRVVIHGHHP NENTTDSSTM GKVIHLTDSI EDLLELAEKK
601: FGKRGNTILM ANGSQVEELN ALRENDHLYI F

Best Arabidopsis Sequence Match ( AT4G32650.1 )
(BLAST)

001: MSTTTTEARS PLPLLLRRGR SSTALSASTA EARSPLSILQ FRRRSSKDVR NITSVSSSLL PAFGTFIEDD NPSSKPFIVL HFDRRYRLWE LFLVILVGYS
101: AWASLFELAF EKAAEGALLT IDLVVDFFFA VDIILTFFVS YLDNTTYLNV TDHKLIAKRY LKSVAFVMDV ASTLPIQFIY KTITGDVGRG QAFGFLNLLR
201: LWRLRRVAEL FKRLEKDAHF NYFVIRVIKL LCVTIFWIHL AGCILYWIAY HYPRPTDTWI GSQVEDFKER SVWLGYTYSM YWSIVTLTTV GYGDLHAVNS
301: REKTFNMFYM LFNIGLTSYI IGIMTNLVVH GALRTFAMRS AINDILRYTS KNRLPDTMRE QMLAHMQLKF KTAELRQEEV LQDLPKAIRS SINQHLFRSI
401: IEEAYLFKGF PEGLLVQLVS QIQAEYFPPK MEIILQNEIP TDFYVIVSGG VDIIASKGVS EQVLAKLGPG SMAGEIGVVF NIPQPFTVRT RRLSQVIRIG
501: HHKFKEMVQS DNDVDAKMII ANFMTYLKGL NDELKKEIPF LRDLLDDADA QVQETVQSEE TPQSNDEEIV TVSRHENGQI EERRREGVPK RVIIHGQAPP
601: NQDNKNNGDS NGRLIILPDS IQLLFDLAEK KLGKRGSTIA MADGAHVEQI DALRENDHLY IF

Arabidopsis Description

KAT3KC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UVX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.