Factsheet for VIT_11s0016g04750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g04510.t01
VIT_04s0008g05770.t01
VIT_06s0004g05460.t01
VIT_10s0003g03270.t01
VIT_10s0003g04020.t01
VIT_11s0016g00200.t01
VIT_11s0016g04750.t01
VIT_12s0034g02240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26650.1	VIT_06s0004g05460.t01	AT1G07430.1	17898163
AT2G26650.1	VIT_10s0003g04020.t01	AT1G30270.1	16814720
AT2G26650.1	VIT_10s0003g04020.t01	AT1G30270.1	17898163
AT2G26650.1	VIT_04s0008g05770.t01	AT2G25090.1	17898163
AT2G26650.1	VIT_11s0016g04750.t01	AT2G26650.1	12678562
AT2G26650.1	VIT_11s0016g04750.t01	AT2G26650.1	15299147
AT2G26650.1	VIT_11s0016g04750.t01	AT2G26650.1	9218788
AT2G26650.1	VIT_12s0034g02240.t01	AT4G22200.1	12678562
AT2G26650.1	VIT_12s0034g02240.t01	AT4G22200.1	15299147
AT2G26650.1	VIT_11s0016g00200.t01	AT4G30960.1	17898163
AT2G26650.1	VIT_04s0008g04510.t01	AT4G32650.1	12678562
AT2G26650.1	VIT_04s0008g04510.t01	AT4G32650.1	15299147
AT2G26650.1	VIT_10s0003g03270.t01	AT5G46240.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006850.1.1	Tomato	plasma membrane	77.98	77.01
PGSC0003DMT400002746	Potato	plasma membrane	76.83	76.66
KRH03745	Soybean	plasma membrane	76.61	76.34
KRH56647	Soybean	plasma membrane	76.83	75.03
AT2G26650.1	Thale cress	plasma membrane	70.76	72.0
GSMUA_Achr3P20680_001	Banana	cytosol, nucleus, plasma membrane	65.14	70.73
CDY35373	Canola	cytosol, plasma membrane, vacuole	69.38	70.35
CDY55714	Canola	cytosol, plasma membrane, vacuole	69.38	70.27
Bra032037.1-P	Field mustard	cytosol	69.15	70.12
GSMUA_AchrUn_...	Banana	plasma membrane	62.61	69.03
VIT_04s0008g04990.t01	Wine grape	mitochondrion	70.18	68.15
GSMUA_Achr5P09840_001	Banana	plasma membrane	63.07	67.07
GSMUA_Achr4P09000_001	Banana	plasma membrane	42.32	66.01
GSMUA_Achr4P08990_001	Banana	cytosol, mitochondrion, plasma membrane	61.24	65.44
Zm00001d044056_P003	Maize	plasma membrane, plastid	66.06	64.94
EES03354	Sorghum	plastid	65.37	64.41
TraesCS3A01G233800.1	Wheat	plasma membrane	65.48	63.66
TraesCS3D01G219600.1	Wheat	plasma membrane	65.48	63.66
TraesCS3B01G265500.1	Wheat	plasma membrane	65.25	63.43
HORVU3Hr1G058300.1	Barley	plasma membrane	64.91	63.03
Zm00001d011473_P003	Maize	plastid	64.33	61.45
Os01t0648000-01	Rice	plasma membrane	64.91	60.53
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	9.75	59.44
VIT_10s0003g03270.t01	Wine grape	plasma membrane	44.38	48.93
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	33.14	45.8
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	41.4	43.03
VIT_14s0006g00230.t01	Wine grape	extracellular	5.62	35.0
VIT_18s0089g01300.t01	Wine grape	plasma membrane	26.61	31.78
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	26.61	31.74
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	29.13	30.94
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	27.41	28.59

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:100266175	wikigene:100266175	Gene3D:2.60.120.10	MapMan:24.3.2.2
EMBL:AM435752	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN80462	ProteinID:CAN80462.1
ProteinID:CAZ64538	ProteinID:CAZ64538.1	ProteinID:CBI28150	ProteinID:CBI28150.3	UniProt:D7TBW5	EMBL:FN401070
EMBL:FN595756	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249
GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805
InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770
InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	EntrezGene:LOC100266175	wikigene:LOC100266175	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF504	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix
UniParc:UPI00015C8A4D	ArrayExpress:VIT_11s0016g04750	EnsemblPlantsGene:VIT_11s0016g04750	EnsemblPlants:VIT_11s0016g04750.t01	unigene:Vvi.22396	RefSeq:XP_002281787
RefSeq:XP_002281787.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:4046107..4052225

Molecular Weight (calculated)

97978.7 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.123

Length

872 amino acids

Sequence
(BLAST)

001: MVDVCMSRGF GVSVCGQPEI EQLSRDGSHY SLSTGILPSL GARSNRRVKL RNFILSPYDR RYRTWETFLV LLVFYTAWVS PFEFGFLKKP EAPLSITDNV
101: VNGFFAVDIV LTFFVAYLDK TTYLLVDNPK QIAWKYTSTW LAFDVISTIP SELARKITPS PFQSYGFFNM LRLWRLRRVS SLFARLEKDR NFNYFWVRCA
201: KLICVTVFAV HCAACFYYLL AARYHDPQKT WIGASMNNFL EQSLWIRYVT AIYWSITTLT TVGYGDLHPE NTREMIFDIF YMLFNLGLTA YLIGNMTNLV
301: VHGTSRTRRF RDTIQAASSF AQRNQLPVRL QDQMLAHLCL KFRTDSEGLQ QQETLDSLPK AIRSSISHFL FYSLLDKVYL FRGVSNDLLF QLVSEMKAEY
401: FPPKEDLILQ NEAPTDFYIV VSGALDLLVL KNGTEQAIGE AKTGDLCGEI GVLCYRPQLF TVRTKRLCQL LRLNRTTFLN IVQANVGDGT IIMNNLLQHL
501: KDLKDPIMEG VLVETENMLA RGRMDLPLSL CFATLRGDDL LLHQLLKRGL DPNESDSNGR TALHIAASKG SESCVLLLLD YGAGPNNRDS EGVVPLWEAM
601: VGGHESVIQL LVDNGANINS GDVGHFACTA AELKNLNLLK QIVHYGGDVT QPNNTGNTAL HAAVCEENIE MVKFLLDQGA DIDRTNDHGW TPRDLADQQG
701: HEDIKALFES CKEHKSQSTI GISEERHGIR FLGKFKSDPS IFPLPQGGSS PAADGSWGHN RPRRRTNKFH NSLFGIMSAA HTGERDMLLS VNVTKSARSG
801: EGYPARVRIS CPEKGDRAGK LMLLPESFQE LLEIGAKKFG ISHAKVQTED GAEIDAIELI RDGDHLVFVS DG

Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)

001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS

Arabidopsis Description

AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.