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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, plasma membrane

Predictor Summary:
  • extracellular 4
  • golgi 4
  • plasma membrane 8
  • endoplasmic reticulum 4
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g010080.2.1
Solyc01g104030.2.1
Solyc02g021440.2.1
Solyc02g070530.2.1
Solyc03g058900.1.1
Solyc05g017930.1.1
Solyc06g076400.2.1
Solyc07g005440.1.1
Solyc08g016500.2.1
Solyc08g067310.1.1
Solyc08g068000.1.1
Solyc10g024360.1.1
Solyc12g006850.1.1
Solyc12g010130.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26650.1 Solyc06g076400.2.1 AT1G07430.1 17898163
AT2G26650.1 Solyc02g021440.2.1 AT1G30270.1 16814720
AT2G26650.1 Solyc02g021440.2.1 AT1G30270.1 17898163
AT2G26650.1 Solyc08g067310.1.1 AT2G25090.1 17898163
AT2G26650.1 Solyc05g017930.1.1 AT2G26650.1 12678562
AT2G26650.1 Solyc12g006850.1.1 AT2G26650.1 12678562
AT2G26650.1 Solyc05g017930.1.1 AT2G26650.1 15299147
AT2G26650.1 Solyc12g006850.1.1 AT2G26650.1 15299147
AT2G26650.1 Solyc05g017930.1.1 AT2G26650.1 9218788
AT2G26650.1 Solyc12g006850.1.1 AT2G26650.1 9218788
AT2G26650.1 Solyc01g104030.2.1 AT4G22200.1 12678562
AT2G26650.1 Solyc10g024360.1.1 AT4G22200.1 12678562
AT2G26650.1 Solyc01g104030.2.1 AT4G22200.1 15299147
AT2G26650.1 Solyc10g024360.1.1 AT4G22200.1 15299147
AT2G26650.1 Solyc07g005440.1.1 AT4G30960.1 17898163
AT2G26650.1 Solyc12g010130.1.1 AT4G30960.1 17898163
AT2G26650.1 Solyc01g010080.2.1 AT4G32650.1 12678562
AT2G26650.1 Solyc08g068000.1.1 AT4G32650.1 12678562
AT2G26650.1 Solyc01g010080.2.1 AT4G32650.1 15299147
AT2G26650.1 Solyc08g068000.1.1 AT4G32650.1 15299147
AT2G26650.1 Solyc02g070530.2.1 AT5G46240.1 15299147
AT2G26650.1 Solyc03g058900.1.1 AT5G46240.1 15299147
AT2G26650.1 Solyc08g016500.2.1 AT5G46240.1 15299147
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P09000_001 Banana plasma membrane 47.55 12.16
Solyc12g006850.1.1 Tomato plasma membrane 71.33 11.55
PGSC0003DMT400002746 Potato plasma membrane 69.23 11.33
Solyc01g010080.2.1 Tomato plastid 44.76 10.19
GSMUA_Achr3P20680_001 Banana cytosol, nucleus, plasma membrane 55.94 9.96
Solyc08g068000.1.1 Tomato plasma membrane 44.76 9.95
VIT_11s0016g04750.t01 Wine grape plasma membrane 59.44 9.75
Solyc02g070530.2.1 Tomato nucleus 46.15 9.59
Solyc08g016500.2.1 Tomato cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 44.76 9.37
GSMUA_AchrUn_... Banana plasma membrane 51.75 9.36
GSMUA_Achr5P09840_001 Banana plasma membrane 53.15 9.27
KRH03745 Soybean plasma membrane 55.94 9.14
KRH56647 Soybean plasma membrane 56.64 9.07
CDY35373 Canola cytosol, plasma membrane, vacuole 53.85 8.95
CDY55714 Canola cytosol, plasma membrane, vacuole 53.85 8.94
Bra032037.1-P Field mustard cytosol 53.15 8.84
EES03354 Sorghum plastid 54.55 8.81
AT2G26650.1 Thale cress plasma membrane 52.45 8.75
GSMUA_Achr4P08990_001 Banana cytosol, mitochondrion, plasma membrane 49.65 8.7
TraesCS3D01G219600.1 Wheat plasma membrane 54.55 8.7
Zm00001d044056_P003 Maize plasma membrane, plastid 53.85 8.68
TraesCS3B01G265500.1 Wheat plasma membrane 53.85 8.58
TraesCS3A01G233800.1 Wheat plasma membrane 53.85 8.58
HORVU3Hr1G058300.1 Barley plasma membrane 53.15 8.46
Zm00001d011473_P003 Maize plastid 53.85 8.43
Os01t0648000-01 Rice plasma membrane 53.15 8.13
Solyc10g024360.1.1 Tomato cytosol 46.15 7.85
Solyc08g066990.2.1 Tomato plasma membrane 44.06 7.31
Solyc01g104030.2.1 Tomato cytosol 41.96 7.17
Solyc03g058900.1.1 Tomato cytosol 9.09 6.67
Solyc09g005220.1.1 Tomato cytosol 11.89 5.94
Solyc03g097940.2.1 Tomato plasma membrane 27.97 5.15
Solyc05g051220.2.1 Tomato cytosol 28.67 4.98
Solyc11g011500.1.1 Tomato cytosol 25.87 4.46
Protein Annotations
MapMan:35.1GO:GO:0003674GO:GO:0005215GO:GO:0005216GO:GO:0005575GO:GO:0006810
GO:GO:0006811GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0034220GO:GO:0055085
InterPro:Ion_trans_domUniProt:K4BZ51PFAM:PF00520PANTHER:PTHR10217PANTHER:PTHR10217:SF504SUPFAM:SSF81324
EnsemblPlantsGene:Solyc05g017930.1EnsemblPlants:Solyc05g017930.1.1TMHMM:TMhelixUniParc:UPI000276703E::
Description
No Description!
Coordinates
chr5:+:19261463..19262252
Molecular Weight (calculated)
16627.5 Da
IEP (calculated)
7.507
GRAVY (calculated)
0.242
Length
143 amino acids
Sequence
(BLAST)
001: MTFLVVLVVY TSWVCPFEFG FIGKPVEPLA KRDKLVNGFF FAIDIILTFF VAFLDRTTYL LVDEHKKIAW KYMSTWFLFD VISTIPSELA VKISPKPLWM
101: RPKARDPMTN HPVLVECGTR LANVEAKIIG HHEFSLRREC EED
Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)
001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS
Arabidopsis Description
AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.