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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • plastid 1
  • vacuole 1
  • mitochondrion 1
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, plastid, vacuole
BaCelLo:plastid
MultiLoc:vacuole
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68708
CDX68872
CDX72282
CDX72366
CDX75267
CDX79135
CDX82921
CDX90240
CDY03233
CDY06259
CDY06705
CDY10275
CDY13400
CDY13496
CDY18067
CDY23269
CDY26276
CDY28231
CDY33464
CDY35154
CDY35373
CDY36461
CDY36606
CDY49976
CDY53472
CDY55714
CDY62359
CDY63182
CDY64718

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26650.1 CDY06259 AT1G07430.1 17898163
AT2G26650.1 CDY06705 AT1G07430.1 17898163
AT2G26650.1 CDY10275 AT1G07430.1 17898163
AT2G26650.1 CDY18067 AT1G07430.1 17898163
AT2G26650.1 CDY36606 AT1G07430.1 17898163
AT2G26650.1 CDX90240 AT1G30270.1 16814720
AT2G26650.1 CDY26276 AT1G30270.1 16814720
AT2G26650.1 CDY49976 AT1G30270.1 16814720
AT2G26650.1 CDY63182 AT1G30270.1 16814720
AT2G26650.1 CDX90240 AT1G30270.1 17898163
AT2G26650.1 CDY26276 AT1G30270.1 17898163
AT2G26650.1 CDY49976 AT1G30270.1 17898163
AT2G26650.1 CDY63182 AT1G30270.1 17898163
AT2G26650.1 CDY53472 AT2G25090.1 17898163
AT2G26650.1 CDY64718 AT2G25090.1 17898163
AT2G26650.1 CDY35373 AT2G26650.1 12678562
AT2G26650.1 CDY55714 AT2G26650.1 12678562
AT2G26650.1 CDY35373 AT2G26650.1 15299147
AT2G26650.1 CDY55714 AT2G26650.1 15299147
AT2G26650.1 CDY35373 AT2G26650.1 9218788
AT2G26650.1 CDY55714 AT2G26650.1 9218788
AT2G26650.1 CDX79135 AT4G22200.1 12678562
AT2G26650.1 CDX82921 AT4G22200.1 12678562
AT2G26650.1 CDX79135 AT4G22200.1 15299147
AT2G26650.1 CDX82921 AT4G22200.1 15299147
AT2G26650.1 CDX68708 AT4G30960.1 17898163
AT2G26650.1 CDX72282 AT4G30960.1 17898163
AT2G26650.1 CDY13400 AT4G30960.1 17898163
AT2G26650.1 CDY23269 AT4G30960.1 17898163
AT2G26650.1 CDY28231 AT4G30960.1 17898163
AT2G26650.1 CDY36461 AT4G30960.1 17898163
AT2G26650.1 CDX68872 AT4G32650.1 12678562
AT2G26650.1 CDX72366 AT4G32650.1 12678562
AT2G26650.1 CDX75267 AT4G32650.1 12678562
AT2G26650.1 CDY13496 AT4G32650.1 12678562
AT2G26650.1 CDX68872 AT4G32650.1 15299147
AT2G26650.1 CDX72366 AT4G32650.1 15299147
AT2G26650.1 CDX75267 AT4G32650.1 15299147
AT2G26650.1 CDY13496 AT4G32650.1 15299147
AT2G26650.1 CDY03233 AT5G46240.1 15299147
AT2G26650.1 CDY33464 AT5G46240.1 15299147
AT2G26650.1 CDY35154 AT5G46240.1 15299147
AT2G26650.1 CDY62359 AT5G46240.1 15299147
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35373 Canola cytosol, plasma membrane, vacuole 98.61 98.72
Bra032037.1-P Field mustard cytosol 98.37 98.49
AT2G26650.1 Thale cress plasma membrane 88.85 89.26
PGSC0003DMT400002746 Potato plasma membrane 70.62 69.57
VIT_11s0016g04750.t01 Wine grape plasma membrane 70.27 69.38
Solyc12g006850.1.1 Tomato plasma membrane 71.08 69.31
KRH03745 Soybean plasma membrane 70.15 69.03
KRH56647 Soybean plasma membrane 70.27 67.75
GSMUA_Achr3P20680_001 Banana cytosol, nucleus, plasma membrane 61.56 66.0
GSMUA_AchrUn_... Banana plasma membrane 59.7 64.98
GSMUA_Achr5P09840_001 Banana plasma membrane 59.58 62.56
GSMUA_Achr4P09000_001 Banana plasma membrane 40.53 62.43
GSMUA_Achr4P08990_001 Banana cytosol, mitochondrion, plasma membrane 58.07 61.27
Zm00001d044056_P003 Maize plasma membrane, plastid 61.32 59.53
EES03354 Sorghum plastid 60.98 59.32
TraesCS3D01G219600.1 Wheat plasma membrane 61.44 58.97
TraesCS3B01G265500.1 Wheat plasma membrane 60.98 58.53
TraesCS3A01G233800.1 Wheat plasma membrane 60.98 58.53
HORVU3Hr1G058300.1 Barley plasma membrane 60.86 58.35
CDX68851 Canola plasma membrane 56.79 57.06
Zm00001d011473_P003 Maize plastid 60.16 56.74
Os01t0648000-01 Rice plasma membrane 60.74 55.94
CDX76746 Canola cytosol 56.79 55.63
CDX75249 Canola plasma membrane 56.45 55.48
CDY11516 Canola cytosol 56.45 55.42
Solyc05g017930.1.1 Tomato nucleus, plasma membrane 8.94 53.85
CDY03233 Canola plasma membrane 37.51 49.24
CDY35154 Canola plasma membrane 37.17 48.71
CDX78839 Canola plasma membrane 38.21 48.1
CDY33464 Canola cytosol, plasma membrane, plastid 37.17 48.05
CDX99479 Canola plasma membrane 38.21 48.03
CDY62359 Canola cytosol, plasma membrane, plastid 37.05 47.9
CDX76529 Canola plasma membrane 34.84 42.13
CDX79135 Canola plasma membrane 38.1 41.62
CDX68872 Canola plastid 31.01 41.01
CDX75267 Canola plastid 30.78 40.71
CDY13496 Canola plastid 30.55 40.09
CDX72366 Canola plastid 28.57 38.14
CDX82921 Canola cytosol 37.4 37.35
CDY34066 Canola endoplasmic reticulum, plasma membrane 25.9 36.86
CDX71184 Canola plasma membrane 27.53 32.29
CDX92017 Canola plasma membrane 30.43 31.6
CDX74231 Canola plasma membrane 30.2 31.36
CDY51528 Canola cytosol 29.97 31.12
CDY28715 Canola cytosol 29.97 31.08
CDY32059 Canola plasma membrane 29.04 30.56
CDY10020 Canola cytosol 10.92 27.57
CDY61287 Canola plasma membrane 12.66 20.57
Protein Annotations
Gene3D:1.10.287.70Gene3D:1.25.40.20Gene3D:2.60.120.10MapMan:24.3.2.2GO:A0A078IZ08UniProt:A0A078IZ08
InterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfEnsemblPlants:CDY55714ProteinID:CDY55714ProteinID:CDY55714.1
GO:GO:0003674GO:GO:0005215GO:GO:0005216GO:GO:0005244GO:GO:0005249GO:GO:0005267
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0006810GO:GO:0006811GO:GO:0006813
GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0034765GO:GO:0055085
GO:GO:0071805EnsemblPlantsGene:GSBRNA2T00017217001InterPro:IPR000595InterPro:IPR002110InterPro:IPR014710InterPro:IPR020683
InterPro:IPR021789InterPro:IPR036770InterPro:Ion_trans_domInterPro:KHA_domInterPro:K_chnl_volt-dep_EAG/ELK/ERGPFAM:PF00027
PFAM:PF00520PFAM:PF11834PFAM:PF12796PRINTS:PR01415PRINTS:PR01463PFscan:PS50042
PFscan:PS50088PFscan:PS50297PFscan:PS51490PANTHER:PTHR10217PANTHER:PTHR10217:SF504InterPro:RmlC-like_jellyroll
SMART:SM00100SMART:SM00248SUPFAM:SSF48403SUPFAM:SSF51206SUPFAM:SSF81324TMHMM:TMhelix
UniParc:UPI0004EEEB67InterPro:cNMP-bd-likeInterPro:cNMP-bd_dom:::
Description
BnaC04g37620DBnaC04g37620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZ08]
Coordinates
chrLK033422:+:45704..51530
Molecular Weight (calculated)
97771.0 Da
IEP (calculated)
7.936
GRAVY (calculated)
-0.173
Length
861 amino acids
Sequence
(BLAST)
001: MGSLRSRGRH EIDEIEQLSR ESSHFSLSTG ILPSLGARSN RRIKLKRFVV SPYNHQYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNGFF
101: AIDIIMTFFV GYLDKSTYLL VDDRKMIAFK YLRSWFVLDL ISTIPSEVAM KISSQSYGLF NMLRLWRVRR VGAFFARLEK DRNFNYFWVR CAKLVCVTIF
201: AVHCAACFYY LIAARHHDPA KTWIGASNAN FHDESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFARRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMNA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV IQDGGTENAL KEVKAGDIIG EIGVLCYKPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ QHLKEMNDPV
501: MENVLLETEN MLARGKLDLP INLFFAAMRE DDLLLHQLLK RGQDPNESDN NGRTPLHIAA SKGSLNCVLH LLEYHADPNC RDAEGNIPLW EAMVEGHEKI
601: VKVLLEHGAT IEAGDVGHFA CTAAEQGNLK LLKEIVRHGG DVTRPRATGT SALHAAVCEG NIEMVKYLLE QGADVNKQDM HNWTAKDLAD QQGHEEIKAL
701: FREKKNQRTH IESSASVPIL KTARRFLGRG TSEPNIRPPS REVSFRITET RPRRKTNNFD NSLFGILASQ NVQKNGLATV DESRVVNQVR VTISCKEKDE
801: VAVKLVLLPG SFKELLELGS SKFGIVAARV MSKDQNMAEI DDVDVIRDGD HLIFATDSSH S
Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)
001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS
Arabidopsis Description
AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.