CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74231
CDX92017
CDY28715
CDY51528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02850.1	CDX74231	AT3G02850.1	15298894
AT3G02850.1	CDX92017	AT3G02850.1	15298894
AT3G02850.1	CDY28715	AT3G02850.1	15298894
AT3G02850.1	CDY51528	AT3G02850.1	15298894

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92017	Canola	plasma membrane	98.79	98.79
Bra001068.1-P	Field mustard	plasma membrane	90.23	98.16
CDY28715	Canola	cytosol	93.73	93.61
CDY51528	Canola	cytosol	93.37	93.37
AT3G02850.1	Thale cress	cytosol, plasma membrane, vacuole	93.24	93.36
KRH72964	Soybean	cytosol	75.27	73.5
KRH17312	Soybean	cytosol, plastid	75.15	73.29
PGSC0003DMT400034446	Potato	cytosol	71.17	71.26
Solyc05g051220.2.1	Tomato	cytosol	70.45	70.87
Solyc11g011500.1.1	Tomato	cytosol	70.57	70.57
CDX71184	Canola	plasma membrane	62.0	70.03
CDY32059	Canola	plasma membrane	66.34	67.24
CDY10020	Canola	cytosol	14.84	36.07
CDX79135	Canola	plasma membrane	29.07	30.58
CDY55714	Canola	cytosol, plasma membrane, vacuole	31.36	30.2
CDY03233	Canola	plasma membrane	23.76	30.03
CDY35373	Canola	cytosol, plasma membrane, vacuole	31.12	30.0
CDY35154	Canola	plasma membrane	23.76	29.98
CDY13496	Canola	plastid	23.64	29.88
CDX78839	Canola	plasma membrane	24.25	29.39
CDX99479	Canola	plasma membrane	24.25	29.34
CDX75267	Canola	plastid	23.04	29.34
CDX68872	Canola	plastid	22.8	29.03
CDX72366	Canola	plastid	22.44	28.84
CDY33464	Canola	cytosol, plasma membrane, plastid	23.16	28.83
CDX68851	Canola	plasma membrane	29.67	28.7
CDY11516	Canola	cytosol	30.16	28.51
CDY62359	Canola	cytosol, plasma membrane, plastid	22.8	28.38
CDX76746	Canola	cytosol	30.04	28.33
CDX75249	Canola	plasma membrane	29.55	27.97
CDX82921	Canola	cytosol	29.07	27.96
CDX76529	Canola	plasma membrane	23.88	27.81
CDY61287	Canola	plasma membrane	17.73	27.74
CDY34066	Canola	endoplasmic reticulum, plasma membrane	17.13	23.47

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:A0A078CAW7
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX74231	ProteinID:CDX74231	ProteinID:CDX74231.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005249	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00112012001	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683
InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix
UniParc:UPI0004EE6EF2	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:

Description

BnaA03g28160D

Coordinates

chrLK031800:+:1891729..1895965

Molecular Weight (calculated)

94095.6 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.088

Length

829 amino acids

Sequence
(BLAST)

001: MGGSSGNGVS YRSDGESDVE LEDYEVDDDF RDGIVETRGD RFNPLTNFLG LDFAGGNGGK FTVINGIRDI SRGSVIHPDN RCYKAWTTFI LIWALYSSFF
101: TPLEFGFFRG LPENLFILDI AGQIAFLVDI VLTFFVSYRD SRTYRMVYRR SSIALRYLKS SFVIDLLACM PWDIIYKAAG EKEEVRYLLL IRLYRVRRVI
201: LFFHKMEKDI RINYLFTRIV KLIFVELYCT HTAACIFYYL ATTLPASQEG YTWIGSLKLG DYSYAKFREI DLWTRYTTSM YFAIVTMATV GYGDIHAVNM
301: REMIFAMIYI SFDMILGAYL IGNMTALIVK GSKTERFRDK MADIMKYMNR NKLSRNIRGQ ITGHLRLQYQ SSYTEAAVLQ DIPVSIRAKI AQTLYMPYIE
401: KVPLFRGCSS EFINQIVIRL HEEFFLPGEV IMEQGSVVDQ LYFVCHGVLE EIGTAKDGSE EIVSLLQPDN SFGEISILCN IPQPYTVRVS ELCRILRLDK
501: QSFMNILEIY FHDGRRILNN LLEGKESNIR IKQLESDITF HISKQEGELA LKLNSAAFYG DLYQLKSLIR AGGDPNKTDY DGRSPLHLAA SRGYEDITLY
601: LIQESVDVNI KDKLGNTPLL EAIKNGNDRV AALLVKEGAT LSIENAGTFL CTVVAKGDSD FLKRLLNNGI DPNSKDYDHR TPLHVAASEG LYLLAMQLVE
701: AGANVLKKDR WGNTPLDEAL GCGNKMLIKL LEDAKSSQMS SLPSSSKELK DRVYKKKCTV YSSHPNDAKE TRRHGIVLWV PRSIEELVRT ATEQLNVSEA
801: SCVLSEDEGK IIDVDLISDG QKLYLTVET

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.