Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- cytosol 2
- vacuole 2
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92017 | Canola | plasma membrane | 94.08 | 93.97 |
| CDX74231 | Canola | plasma membrane | 93.36 | 93.24 |
| Bra001068.1-P | Field mustard | plasma membrane | 85.39 | 92.78 |
| CDY28715 | Canola | cytosol | 92.63 | 92.41 |
| Bra040606.1-P | Field mustard | cytosol, plasma membrane, vacuole | 92.51 | 92.4 |
| CDY51528 | Canola | cytosol | 92.39 | 92.28 |
| KRH72964 | Soybean | cytosol | 75.24 | 73.38 |
| KRH17312 | Soybean | cytosol, plastid | 74.88 | 72.94 |
| PGSC0003DMT400034446 | Potato | cytosol | 71.14 | 71.14 |
| Solyc11g011500.1.1 | Tomato | cytosol | 70.53 | 70.45 |
| Solyc05g051220.2.1 | Tomato | cytosol | 70.05 | 70.39 |
| AT5G37500.2 | Thale cress | plasma membrane | 66.43 | 65.32 |
| AT2G26650.1 | Thale cress | plasma membrane | 30.8 | 29.75 |
| AT4G32650.1 | Thale cress | plastid | 23.67 | 29.61 |
| AT4G22200.1 | Thale cress | cytosol, plastid, vacuole | 28.38 | 29.3 |
| AT4G32500.1 | Thale cress | plasma membrane | 30.56 | 28.75 |
| AT5G46240.1 | Thale cress | plasma membrane | 23.43 | 28.66 |
| AT2G25600.1 | Thale cress | cytosol | 30.68 | 28.6 |
| AT4G18290.2 | Thale cress | mitochondrion, plasma membrane | 24.28 | 28.39 |
Protein Annotations
| Gene3D:1.10.287.630 | Gene3D:1.10.287.70 | Gene3D:1.25.40.20 | Gene3D:2.60.120.10 | MapMan:24.3.2.2 | EntrezGene:821052 |
| UniProt:A0A178VHK5 | ProteinID:AAF26975.1 | ProteinID:AEE73866.1 | EMBL:AJ223358 | ArrayExpress:AT3G02850 | EnsemblPlantsGene:AT3G02850 |
| RefSeq:AT3G02850 | TAIR:AT3G02850 | RefSeq:AT3G02850-TAIR-G | EnsemblPlants:AT3G02850.1 | TAIR:AT3G02850.1 | InterPro:Ankyrin_rpt |
| InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | Unigene:At.48613 | ProteinID:CAA11280.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005244 | GO:GO:0005249 | GO:GO:0005267 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0006813 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015271 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0034765 | GO:GO:0042391 | GO:GO:0055075 | GO:GO:0055085 | GO:GO:0071805 |
| InterPro:IPR000595 | InterPro:IPR002110 | InterPro:IPR014710 | InterPro:IPR020683 | InterPro:IPR021789 | InterPro:IPR036770 |
| InterPro:Ion_trans_dom | InterPro:KHA_dom | InterPro:K_chnl_volt-dep_EAG/ELK/ERG | RefSeq:NP_186934.1 | ProteinID:OAP05779.1 | PFAM:PF00027 |
| PFAM:PF00520 | PFAM:PF11834 | PFAM:PF12796 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0020124 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01415 | PRINTS:PR01463 | PFscan:PS50042 |
| PFscan:PS50088 | PFscan:PS50297 | PFscan:PS51490 | PANTHER:PTHR10217 | PANTHER:PTHR10217:SF478 | UniProt:Q9M8S6 |
| InterPro:RmlC-like_jellyroll | Symbol:SKOR | SMART:SM00100 | SMART:SM00248 | SUPFAM:SSF48403 | SUPFAM:SSF51206 |
| SUPFAM:SSF81324 | TMHMM:TMhelix | UniParc:UPI00000A1917 | InterPro:cNMP-bd-like | InterPro:cNMP-bd_dom | SEG:seg |
Description
SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
Coordinates
chr3:-:619678..623739
Molecular Weight (calculated)
93904.6 Da
IEP (calculated)
6.680
GRAVY (calculated)
-0.046
Length
828 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.