Factsheet for PGSC0003DMT400034446

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400034446

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02850.1	PGSC0003DMT400034446	AT3G02850.1	15298894

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011500.1.1	Tomato	cytosol	97.58	97.47
KRH72964	Soybean	cytosol	75.48	73.62
KRH17312	Soybean	cytosol, plastid	75.12	73.18
VIT_14s0006g00230.t01	Wine grape	extracellular	12.32	72.86
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	71.38	71.99
Bra001068.1-P	Field mustard	plasma membrane	65.82	71.52
CDY51528	Canola	cytosol	71.38	71.29
Bra040606.1-P	Field mustard	cytosol, plasma membrane, vacuole	71.38	71.29
CDY28715	Canola	cytosol	71.38	71.2
CDX92017	Canola	plasma membrane	71.26	71.17
CDX74231	Canola	plasma membrane	71.26	71.17
AT3G02850.1	Thale cress	cytosol, plasma membrane, vacuole	71.14	71.14
PGSC0003DMT400037608	Potato	plastid	24.15	32.1
PGSC0003DMT400065964	Potato	cytosol, plastid	23.67	31.06
PGSC0003DMT400091020	Potato	peroxisome, plasma membrane	21.86	29.62
PGSC0003DMT400074787	Potato	cytosol, nucleus, plasma membrane	30.8	29.62
PGSC0003DMT400002746	Potato	plasma membrane	30.19	28.6
PGSC0003DMT400054339	Potato	plasma membrane	23.07	27.76
PGSC0003DMT400061090	Potato	cytosol	27.05	27.18
PGSC0003DMT400024968	Potato	cytosol, plasma membrane, vacuole	22.46	27.0
PGSC0003DMT400062100	Potato	plasma membrane	27.29	26.84
PGSC0003DMT400054318	Potato	nucleus	8.09	21.27
PGSC0003DMT400024866	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.76	19.38

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:102582312	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244
GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0015271	GO:GO:0016020
GO:GO:0016021	GO:GO:0034765	GO:GO:0055075	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595
InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom
InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	UniProt:M1B0P5	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834
PFAM:PF12796	PFAM:PF13857	EnsemblPlantsGene:PGSC0003DMG400013243	PGSC:PGSC0003DMG400013243	EnsemblPlants:PGSC0003DMT400034446	PRINTS:PR01415
PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217
PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206
SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI000296BCF0	RefSeq:XP_006352480.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom

Description

Potassium channel TORK1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013243]

Coordinates

chr11:-:1149991..1156528

Molecular Weight (calculated)

94661.4 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.137

Length

828 amino acids

Sequence
(BLAST)

001: MTRGEEVLEI DINGGRAEYE IEDMRDKMES SRGSRFKLSE NDLVGVDLLS RRRRKISRES LLNGLKDLSQ GFVIHPDNRW YRMWENFILI WSIYSSFFTP
101: MEFAFFNGLP RKLFLLDICG QIVFLVDIVI QFSVAYRDSQ TYKMVYKRTP IALRYLKSHF IMDFLGCMPW DIIYKAVGSK EEVRYLLWIR LSRARRITYF
201: FQKMEKDIRI NYLFTRIVKL ITVELYCTHT AACIFYFLAT TLSEQQEGYT WIGSLKLGDY SYSNFRDIDL WTRYTTSMYF AIVTMATVGY GDIHAVNLRE
301: MIFVMIYVSF DMILSAYLIG NMTALIVKGS KTERYRDKMT DLLKYMNRNR LGRDIRNQIK GHLRLQYESA YTDAAVLQDI PISIRAKISQ NLYQSYIENV
401: PLFKGCSSEF ISQVVTRVHE EFFLPGEVIM EQGNVVDQLY FVCHGVLEEV GIAKNGSEET VSLLEPNSSF GDISIVCNIP QPYTVRVCEL CRLLRIDKQS
501: FANILEIYFH DGRRILSNLL QGKESNLRVK QLESDIALHI GKHEAELALK VNSAAYHGDL HQLKSLIRAG ADPNKKDYDG RSPLHLAASR GYEDITLFLI
601: QEGVDINAPD KFGNTPLLEA IKSGHDRVAS LLVKEGALLN IENAGSFLCM VIAKGDSDLL RRLLSNGVDP NNKDYDQRTP LHVAASQGQY SMAKLLLGAG
701: ASVFSKDRWG NTPVDEARVS GNKQMISLLE EAKSAQLSEF PDVPHEISDK LRPRKCTVFP FHPWESKDVR KHGVVLWIPQ TIEELVITAS EQLGFPSGSC
801: ILSEDAGKIL DVDMIVDGQK LYLINEST

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.