Factsheet for Bra001068.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001068.1-P
Bra040606.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02850.1	Bra001068.1-P	AT3G02850.1	15298894
AT3G02850.1	Bra040606.1-P	AT3G02850.1	15298894

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74231	Canola	plasma membrane	98.16	90.23
CDX92017	Canola	plasma membrane	97.64	89.75
Bra040606.1-P	Field mustard	cytosol, plasma membrane, vacuole	93.04	85.52
AT3G02850.1	Thale cress	cytosol, plasma membrane, vacuole	92.78	85.39
KRH17312	Soybean	cytosol, plastid	75.98	68.12
KRH72964	Soybean	cytosol	75.72	67.96
PGSC0003DMT400034446	Potato	cytosol	71.52	65.82
Solyc05g051220.2.1	Tomato	cytosol	70.47	65.17
Solyc11g011500.1.1	Tomato	cytosol	70.87	65.14
Bra036395.1-P	Field mustard	cytosol	68.11	63.53
Bra037049.1-P	Field mustard	plastid	23.88	28.22
Bra032037.1-P	Field mustard	cytosol	31.76	28.14
Bra011367.1-P	Field mustard	plastid	23.75	27.8
Bra017567.1-P	Field mustard	plasma membrane	23.62	27.4
Bra007785.1-P	Field mustard	cytosol	30.45	26.79
Bra013296.1-P	Field mustard	plasma membrane	23.88	26.49
Bra011351.1-P	Field mustard	cytosol	30.18	26.26
Bra025028.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	22.83	26.13
Bra013599.1-P	Field mustard	cytosol	29.4	25.99
Bra021012.1-P	Field mustard	plasma membrane	23.23	24.86
Bra021279.1-P	Field mustard	nucleus	18.5	24.65

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra001068	EnsemblPlants:Bra001068.1	EnsemblPlants:Bra001068.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005249	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110
InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	UniProt:M4CA39
PFAM:PF00027	PFAM:PF00520	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll	SMART:SM00100
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI00025408DB
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:	:

Description

AT3G02850 (E=0.0) SKOR | SKOR; cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel

Coordinates

chrA03:-:14585291..14589032

Molecular Weight (calculated)

86631.0 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.024

Length

762 amino acids

Sequence
(BLAST)

001: MGGSSGNVVS YRSDGESDVE LEDYEVDDDF RDGIVETRGN RFNPLTNFLG LDFAGGNGGK FTVINGIRDI SRGSVIHPDN RCYKAWTTFI LIWALYSSFF
101: TPLEFGFFRG LPENLFILDI AGQIAFLVDI VLTFFVAYRD SRTYRMVYRR SSIALRYLKS SFVIDLLACM PWDIIYKAAG EKEEVRYLLL IRLYRVRRVI
201: LFFHKMEKDI RINYLFTRIV KLIFVELYCT HTAACIFYYL ATTLPASQEG YTWIGSLKLG DYSYAKFREI DLWTRYTTSM YFAIVTMATV GYGDIHAVNM
301: REMIFAMIYI SFDMILGAYL IGNMTALIVK GSKTERFRDK MADIMKYMNR NKLSRNIRGQ ITGHLRLQYQ SSYTEAAVLQ DIPVSIRAKI AQTLYMPYIE
401: KVPLFRGCSS EFINQIVIRL HEEFFLPGEV IMEQGSVVDQ LYFVCHGVLE EIGTAKDGSE EIVSLLQPDN SFGEISILCN IPQPYTVRVS ELCRILRLDK
501: QSFMNILEIY FHDGRRILNN LLEGKESNIR IKQLESDITF HISKQEGELA LKLNSAAFYG DLYQLKSLIR AGGDPNKTDY DGRSPLHLAA SRGYEDITLY
601: LIQESVDVNI KDKLGNTPLL EAIKNGNDRV AALLVKEGAT LSIENAGTFL CTVVAKRDSD FLKRLLNNGI DPNSKDYDHR TPLHVAASEG LYLLAMQLVE
701: AGANVLKKDR WGNTPLDEAL GCGNKMLIKL LEDAKSSQMS SLPSSSKELK GLIGIHVYIL KY

Best Arabidopsis Sequence Match ( AT3G02850.2 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKG SFIGI

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.