CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH17312
KRH72964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02850.1	KRH17312	AT3G02850.1	15298894
AT3G02850.1	KRH72964	AT3G02850.1	15298894

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17312	Soybean	cytosol, plastid	94.7	94.59
VIT_14s0006g00230.t01	Wine grape	extracellular	13.19	80.0
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	73.62	76.13
Bra001068.1-P	Field mustard	plasma membrane	67.96	75.72
PGSC0003DMT400034446	Potato	cytosol	73.62	75.48
CDX92017	Canola	plasma membrane	73.62	75.39
CDX74231	Canola	plasma membrane	73.5	75.27
AT3G02850.1	Thale cress	cytosol, plasma membrane, vacuole	73.38	75.24
Solyc11g011500.1.1	Tomato	cytosol	73.38	75.15
CDY51528	Canola	cytosol	73.03	74.79
Bra040606.1-P	Field mustard	cytosol, plasma membrane, vacuole	73.03	74.79
CDY28715	Canola	cytosol	72.91	74.58
Solyc05g051220.2.1	Tomato	cytosol	72.08	74.27
KRH60563	Soybean	mitochondrion, plasma membrane	53.47	58.28
KRH61812	Soybean	plasma membrane	31.1	30.07
KRH56647	Soybean	plasma membrane	31.57	30.01
KRH03745	Soybean	plasma membrane	30.86	29.94
KRH61886	Soybean	plasma membrane	21.67	29.44
KRH44060	Soybean	cytosol	28.86	29.38
KRH26375	Soybean	cytosol	28.39	29.0
KRH05105	Soybean	cytosol, plasma membrane, vacuole	28.98	28.41
KRH44805	Soybean	plasma membrane	24.26	28.3
KRH52490	Soybean	plasma membrane	29.09	28.1
KRH16013	Soybean	plasma membrane	28.5	27.66
KRH52547	Soybean	cytosol	19.32	27.61
KRH21063	Soybean	plasma membrane	25.21	27.54
KRH11194	Soybean	plasma membrane	25.09	27.41
KRH58233	Soybean	cytosol, extracellular, plasma membrane	6.95	26.58

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:100797927	Gene3D:2.60.120.10	MapMan:24.3.2.2	EMBL:ACUP02001258
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_02G243400	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811
GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0034765	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110
InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	UniProt:K7KAI6
InterPro:KHA_dom	EnsemblPlants:KRH72964	ProteinID:KRH72964	ProteinID:KRH72964.1	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix
UniParc:UPI0002337920	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:43138504..43148118

Molecular Weight (calculated)

97408.2 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.184

Length

849 amino acids

Sequence
(BLAST)

001: MTGKKNVKAM TTAEEEDDQG KHTTSSSFSS SSSPSSSSDE REYEVQDLRD RLKSSQGSMF NLIENQLGLN STWSKFSRQA LLHGIRGFSM DLVKDFVIHP
101: DNRWYRAWTN FILVWAVYSS FFTPMEFGFF RGLPENLFIL DIIGQIAFLV DIVLQFFVAY RDSQTYRMVY KRTPIALRYL KSNFIFDLLG CMPWDIIYKA
201: CGRKEEVRYL LWIRLYRVRK VEDFFHKLEK DIRVNYIITR IVKLIVVELY CTHTAACIFY YLATTLPESQ EGYTWIGSLK LGDFSYSHFR EIDLWKRYTT
301: SLYFAIVTMA TVGYGDMHAV NMREMIFIMV YVSFDMILGA YLIGNMTALI VKGSKTEKFR DKMTDLMKYM NRNRLGRDIR EQIKGHVRLQ YESSYTEASV
401: IQDIPISIRA KISQTLYLPY IEKVSLFKGC SSEFINQIVI RLHEEFFLPG EVIMEQGNVV DQLYFVCHGV LEEVGIAEDG TEETVSLLQP NSSFGEISIL
501: CNIPQPYTVR VCELGRLLRL DKQSFTNILD IYFYDGRKVL YNLLEGKESF RDKQLESDIT FHLGKQEAEL ALKVNSAAFN GDMYQLKGLI RAGADPNKAD
601: YDGRSPLHLA ASRGYEDITI FLIQERVDVN IIDNFGNTPL LEAVKNGHDR VASLLVKEGA SMKIENAGSF LCTAVARGDS DYLKRLLSNG MDPNLKDYDY
701: RSPLHVAAAE GLYFMAKLLL EAGASVFTRD RWGNTPLDEA RMCGNKNLIK LLEDAKSSQL SEFPSQEFTD KMHPKKCTVF PFHPWDPKDN RRHGIVLWIP
801: HSIEELIKSA AEQIEISGGS CILSEDAGKI TDVDMIKDGQ KLYLVHETH

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.