CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74231
CDX92017
CDY28715
CDY51528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02850.1	CDX74231	AT3G02850.1	15298894
AT3G02850.1	CDX92017	AT3G02850.1	15298894
AT3G02850.1	CDY28715	AT3G02850.1	15298894
AT3G02850.1	CDY51528	AT3G02850.1	15298894

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51528	Canola	cytosol	99.04	99.16
CDX92017	Canola	plasma membrane	93.73	93.85
CDX74231	Canola	plasma membrane	93.61	93.73
AT3G02850.1	Thale cress	cytosol, plasma membrane, vacuole	92.41	92.63
KRH72964	Soybean	cytosol	74.58	72.91
KRH17312	Soybean	cytosol, plastid	74.46	72.71
PGSC0003DMT400034446	Potato	cytosol	71.2	71.38
Solyc05g051220.2.1	Tomato	cytosol	70.24	70.75
Solyc11g011500.1.1	Tomato	cytosol	70.6	70.69
CDX71184	Canola	plasma membrane	61.2	69.21
CDY32059	Canola	plasma membrane	64.94	65.89
CDY10020	Canola	cytosol	14.82	36.07
CDX79135	Canola	plasma membrane	29.64	31.22
CDX78839	Canola	plasma membrane	24.94	30.26
CDX99479	Canola	plasma membrane	24.94	30.22
CDY03233	Canola	plasma membrane	23.73	30.03
CDY13496	Canola	plastid	23.73	30.03
CDY35154	Canola	plasma membrane	23.73	29.98
CDY55714	Canola	cytosol, plasma membrane, vacuole	31.08	29.97
CDX75267	Canola	plastid	23.37	29.8
CDY35373	Canola	cytosol, plasma membrane, vacuole	30.84	29.77
CDX68851	Canola	plasma membrane	30.48	29.52
CDX68872	Canola	plastid	23.13	29.49
CDY33464	Canola	cytosol, plasma membrane, plastid	23.49	29.28
CDX76529	Canola	plasma membrane	24.82	28.93
CDX72366	Canola	plastid	22.41	28.84
CDY62359	Canola	cytosol, plasma membrane, plastid	23.13	28.83
CDX75249	Canola	plasma membrane	30.36	28.77
CDX82921	Canola	cytosol	29.64	28.54
CDY11516	Canola	cytosol	30.0	28.39
CDX76746	Canola	cytosol	29.88	28.21
CDY61287	Canola	plasma membrane	17.59	27.55
CDY34066	Canola	endoplasmic reticulum, plasma membrane	17.47	23.97

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:A0A078GQ94
UniProt:A0A078GQ94	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY28715	ProteinID:CDY28715
ProteinID:CDY28715.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249
GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765
GO:GO:0055085	GO:GO:0071805	EnsemblPlantsGene:GSBRNA2T00041352001	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710
InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG
PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463
PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478
InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324
TMHMM:TMhelix	UniParc:UPI0004EEFB9D	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:

Description

BnaCnng06010DBnaCnng06010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ94]

Coordinates

chrLK032225:-:331709..335486

Molecular Weight (calculated)

94161.7 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.071

Length

830 amino acids

Sequence
(BLAST)

001: MGGSSGGGVS YRSDVDSDVE LEDYEVDDDF GEEGIVESGG NRFNPLTNFL GLDFTGGNGG KFTVINGIRD ISRGSVVHPD SGCYKAWTMF IVIWALYSSF
101: FTPLEFGFFR GLPGNLFILD ILGQIAFLVD IVLTFFVAYR DSRTYRMVYR RSSIALRYLK STFIIDFLSC MPWDIIYKVA GRKEEVRYLL LIRLYRVRRV
201: ILFFHKMEKD IRINYLFTRI VKLIFVELYC THTAACIFYY LATTLPASQE GYTWIGSLKL GDYSYAKFRE IDLWTRYTTS MYFAVVTMAT VGYGDIHAVN
301: MREMIFAMAY ISFDMILGAY LIGNMTALIV KGSKTERFRD KMADIMRYMN RNKLGRNIRG QITGHLRLQY ESSYTEAAVL QDIPVSIRAK IAQTLYLSYI
401: EKVPLFRGCS SEFINQIVIR LHEEFFLPGE VIMEQGSVVD QLYFVCHGVL EEIGTAKDGS EEIVSLLQPD NSFGEISILC NIPQPYTVRV SELCRILRLD
501: KQSFMNILEI YFHDGRRILN NLLEGKESNG RIKQLESDIT FHISKQEAEL ALKLNSAAFY GDLYQLKSLI RAGADPNKTD YDGRSPLHLA ASRGYEDITL
601: YLIQESVDVN IKDKLGNTPL LEAIKNGNDR VATLLVKEGA TLSIENAGTF LCTVVAKGDS DFLKRLLNNG IDPNSKDYDQ RTPLHVASSE GLYLLARQLV
701: EAGANVLKKD RWGNTPLDEA LVCGNKMLIK LLEDAKTSQM SSFLNSSKEI KDKVYKKKCT VYSSHPNDSK EKRRRGIVLW VPRSIEELVR TAAEQLNFPE
801: ASCVLSEDEG KIIDVELISD GQKLYLTIET

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.