Factsheet for Solyc05g051220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g051220.2.1
Solyc11g011500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02850.1	Solyc05g051220.2.1	AT3G02850.1	15298894
AT3G02850.1	Solyc11g011500.1.1	AT3G02850.1	15298894

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011500.1.1	Tomato	cytosol	80.7	80.22
VIT_14s0006g00230.t01	Wine grape	extracellular	13.11	77.14
KRH72964	Soybean	cytosol	74.27	72.08
KRH17312	Soybean	cytosol, plastid	74.15	71.88
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	71.24	71.5
Bra001068.1-P	Field mustard	plasma membrane	65.17	70.47
CDY51528	Canola	cytosol	70.87	70.45
Bra040606.1-P	Field mustard	cytosol, plasma membrane, vacuole	70.87	70.45
CDX74231	Canola	plasma membrane	70.87	70.45
CDX92017	Canola	plasma membrane	70.75	70.33
CDY28715	Canola	cytosol	70.75	70.24
AT3G02850.1	Thale cress	cytosol, plasma membrane, vacuole	70.39	70.05
Solyc03g097940.2.1	Tomato	plasma membrane	59.95	63.58
Solyc01g010080.2.1	Tomato	plastid	25.49	33.44
Solyc08g068000.1.1	Tomato	plasma membrane	24.76	31.73
Solyc12g006850.1.1	Tomato	plasma membrane	31.31	29.22
Solyc08g016500.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	23.91	28.84
Solyc08g066990.2.1	Tomato	plasma membrane	30.1	28.77
Solyc05g017930.1.1	Tomato	nucleus, plasma membrane	4.98	28.67
Solyc01g104030.2.1	Tomato	cytosol	27.91	27.48
Solyc02g070530.2.1	Tomato	nucleus	22.94	27.47
Solyc10g024360.1.1	Tomato	cytosol	26.82	26.28
Solyc09g005220.1.1	Tomato	cytosol	8.86	25.52
Solyc03g058900.1.1	Tomato	cytosol	5.46	23.08

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244
GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085
GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789
InterPro:IPR036770	InterPro:Ion_trans_dom	UniProt:K4C1F3	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PFAM:PF13857	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	EnsemblPlantsGene:Solyc05g051220.2
EnsemblPlants:Solyc05g051220.2.1	TMHMM:TMhelix	UniParc:UPI0002767437	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg

Description

No Description!

Coordinates

chr5:-:61475016..61486575

Molecular Weight (calculated)

94434.0 Da

IEP (calculated)

6.852

GRAVY (calculated)

-0.137

Length

824 amino acids

Sequence
(BLAST)

001: MSMKRELREE RNGRDSPKEY KMDDLRDSMK SLRSTSRLAM MENELIADST PWRFSSENVL NGLRGLSQGF VIYPDDRWYK LWDKFILIWA IYSTFFTPME
101: FGFFKGLPRK LFLLDICGQI AFLVDIVIQF FVAYRDSQTY KMVYRRTPIA LRYLKSHFIL DVLSCMPWDN IYKASGRKEG VRYLLWIRLS RVRRVTDFFQ
201: KMEKDIRINY LFTRIVKLIT VELYCTHTAA CIFYFLATTL PEEKEGYTWI GSLTLGDYSY SHFREIDLWR RYITSLYFAI VTMATVGYGD IHAVNLREMI
301: FVMVYVSFDM ILGAYLIGNM TALIVKGSKT VRYRDKMTDL MNYMNRNRLG RDIRSQIKDH LRLQYESAYT DGAVLQDLPI SIRAKISQTL YLSCIENIPL
401: FRECSAEFIS QIVTRVHEEF FLPGEVIMEQ GHVVDQLYFV CDGVLEEVGI GEDGSQETVA LLEPNSSFGE ISILCNIPQP YTVRVSELCR LIRIDKQSFS
501: NILEIYFHDG RRILTNLLEG KDLRVKQLES DITFHIGKQE AELALKVNSA AYHGDLHQLK SLIRAGADPN KKDYDGRSPL HLSASRGYED ISIFLIKEGV
601: DFNASDNFGN TPLFEAIKNG HDRVASLLVK EGAFLKIENA GSFLCTLVTK GDSDLLRRLL SNGIDANSKD YDHRTPLHVA ASQGLLAMAR LLLGAGASVF
701: SKDRWGNTPF DEARLSGNNQ LIKLLEEAKS AQTSEIHSVS HEISEKIHLR KCTVYPIHPW EPKDLRKHGV VLWVPTSMEE LVTAASEQLN FSSGSCILSE
801: DAGKILDIDM ISDGQKLYLI SETT

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.