Factsheet for VIT_14s0006g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 2
plasma membrane 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g00230.t01	Wine grape	extracellular	15.35	90.0
KRH72964	Soybean	cytosol	76.13	73.62
KRH17312	Soybean	cytosol, plastid	76.0	73.41
PGSC0003DMT400034446	Potato	cytosol	71.99	71.38
Solyc05g051220.2.1	Tomato	cytosol	71.5	71.24
Solyc11g011500.1.1	Tomato	cytosol	71.62	70.93
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	60.9	68.4
CDX71184	Canola	plasma membrane	60.66	67.85
Bra036395.1-P	Field mustard	cytosol	63.7	64.01
CDY32059	Canola	plasma membrane	63.7	63.94
AT5G37500.2	Thale cress	plasma membrane	64.92	63.3
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	63.95	62.8
VIT_18s0089g01300.t01	Wine grape	plasma membrane	51.77	58.22
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	23.14	30.11
VIT_11s0016g04750.t01	Wine grape	plasma membrane	30.94	29.13
VIT_10s0003g03270.t01	Wine grape	plasma membrane	27.04	28.07
VIT_04s0008g04990.t01	Wine grape	mitochondrion	30.45	27.84
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	28.38	27.77

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:100233111	wikigene:100233111	Gene3D:2.60.120.10
MapMan:24.3.2.2	EMBL:AJ490336	EMBL:AM437393	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ProteinID:CAD35400	ProteinID:CAD35400.1	ProteinID:CAN64951	ProteinID:CAN64951.1	ProteinID:CCB57602	ProteinID:CCB57602.1
ncoils:Coil	UniProt:F6HSG2	EMBL:FN596245	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005244	GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0034765
GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710
InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG
PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	EntrezGene:SOR	wikigene:SOR	SUPFAM:SSF48403	SUPFAM:SSF51206
SUPFAM:SSF81324	TIGR:TC70027	TMHMM:TMhelix	UniParc:UPI00021096AD	ArrayExpress:VIT_14s0006g00100	EnsemblPlantsGene:VIT_14s0006g00100
EnsemblPlants:VIT_14s0006g00100.t01	unigene:Vvi.140	RefSeq:XP_010660282.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg

Description

No Description!

Coordinates

chr14:-:13205171..13235118

Molecular Weight (calculated)

94150.1 Da

IEP (calculated)

6.224

GRAVY (calculated)

-0.067

Length

821 amino acids

Sequence
(BLAST)

001: MNRFMYLVGR GQVVDDEDDG DFQMPDLRER IKGSSASVLN MFNGDLGLRR FSGGSCFNGI KGFIILPDNW WYRTWTKFIL LWAVYSSFFT PMEFGFFRGL
101: PEDLVFLDIA GQIAFLIDIV LRFFLAYRDA HTYRMVYKRT SIALRYMKSS FVIDLICCLP WDIIYKACGR KEEVRYLLWI RLIRVCKVTD FFQNLEKDTR
201: INYMFTRILK LIAVELYCTH TAACVFYYLA TTLPQSEEGY TWIGSLKLGD YSYSHFREID IWKRYTTSLY FAIITMATVG YGDIHAVNLR EMIFVMIYVS
301: FDMILGAYLI GNMTALIVKG SKTERFRDKM TDVIKYMNRN RLDRDVRNQI KGHLRLQYES GYTEASVIQD LPISIRAKIA QTLYKPLVEK VSLFRGCSLE
401: LINQIVIRVH EEFFLPGEVI MEQGNVVDQL YFVCHGMLEE IGIGADGSEE TVLPLQPNSS FGEISILCNI PQPYTVRVLE LCRLLRLDKQ SFTDILEIYF
501: YDGRRILNNL LEGKESNLRV KQLESDITFH IGRQEAELAL RVNSASYHGD LYQLKSLIRA GADPNKTDYD GRSPLHLASA RGFEDIVTFL IQEGVDVNIS
601: DNFGNTPLLE AIKNAHDRVA SLLVNKGALL KIDDAGGFLC ATIARGDSDF LKRILSNGID PNSKDYDHRT PLHVAASEGL YFMAKLLLEA RASVFSKDRW
701: GNTPLDEGWK CGNKNLMKLL EDAKVAQLSE FPDCSREITD KMHPRKCTVF PFHPWDPKEH KRPGIMLWVP QTIEELIKTA TEGLQFSSES CILSEDGGKI
801: LDVDMISDGQ KLYLLCETLD I

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.