Factsheet for VIT_10s0003g03270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g03270.t01
VIT_11s0016g04750.t01
VIT_12s0034g02240.t01
VIT_15s0021g00650.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46240.1	VIT_11s0016g04750.t01	AT2G26650.1	15299147
AT5G46240.1	VIT_12s0034g02240.t01	AT4G22200.1	12034902
AT5G46240.1	VIT_12s0034g02240.t01	AT4G22200.1	15299147
AT5G46240.1	VIT_12s0034g02240.t01	AT4G22200.1	17085433
AT5G46240.1	VIT_15s0021g00650.t01	AT5G41160.1	15299147
AT5G46240.1	VIT_10s0003g03270.t01	AT5G46240.1	11042178
AT5G46240.1	VIT_10s0003g03270.t01	AT5G46240.1	15299147
AT5G46240.1	VIT_10s0003g03270.t01	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03233	Canola	plasma membrane	56.13	67.68
KRH44805	Soybean	plasma membrane	62.2	67.58
Bra017567.1-P	Field mustard	plasma membrane	55.75	67.12
CDY35154	Canola	plasma membrane	55.75	67.12
CDX99479	Canola	plasma membrane	57.52	66.42
CDX78839	Canola	plasma membrane	57.14	66.08
CDY33464	Canola	cytosol, plasma membrane, plastid	55.63	66.07
Bra013296.1-P	Field mustard	plasma membrane	57.14	65.79
CDY62359	Canola	cytosol, plasma membrane, plastid	55.37	65.77
Bra025028.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	55.12	65.47
AT5G46240.1	Thale cress	plasma membrane	55.5	64.84
AT4G18290.2	Thale cress	mitochondrion, plasma membrane	57.4	64.12
Solyc02g070530.2.1	Tomato	nucleus	55.63	63.95
PGSC0003DMT400054339	Potato	plasma membrane	55.63	63.95
KRH21063	Soybean	plasma membrane	62.71	63.84
Os01t0756700-01	Rice	plasma membrane	40.33	63.55
KRH11194	Soybean	plasma membrane	61.95	63.06
TraesCS3A01G294200.1	Wheat	mitochondrion, plasma membrane	39.44	62.4
TraesCS3B01G328800.1	Wheat	plasma membrane	39.7	62.18
TraesCS3D01G294000.1	Wheat	mitochondrion, plasma membrane	39.44	62.15
Solyc08g016500.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	53.48	61.93
GSMUA_Achr10P...	Banana	plasma membrane	51.2	61.64
PGSC0003DMT400024968	Potato	cytosol, plasma membrane, vacuole	53.1	60.96
EES01496	Sorghum	mitochondrion, plasma membrane	40.83	60.94
GSMUA_Achr7P09360_001	Banana	plasma membrane	49.94	60.77
HORVU3Hr1G072850.15	Barley	plastid	38.31	59.18
GSMUA_Achr6P05630_001	Banana	cytosol, nucleus, plasma membrane	50.19	58.3
CDX76529	Canola	plasma membrane	51.45	57.16
Bra021012.1-P	Field mustard	plasma membrane	51.33	57.02
Os01t0210700-02	Rice	extracellular	42.86	56.41
GSMUA_Achr6P26910_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	50.82	55.14
GSMUA_Achr9P06470_001	Banana	plasma membrane	50.32	55.12
EES06576	Sorghum	plasma membrane	50.19	54.46
Os02t0245800-01	Rice	plasma membrane	48.93	53.9
GSMUA_Achr8P27260_001	Banana	plasma membrane	49.18	53.66
TraesCS6D01G152200.1	Wheat	plasma membrane	48.8	53.17
TraesCS6B01G190900.1	Wheat	plasma membrane	48.67	53.1
TraesCS6A01G160500.1	Wheat	plasma membrane	48.67	53.03
CDY34066	Canola	endoplasmic reticulum, plasma membrane	40.2	52.56
GSMUA_Achr2P09100_001	Banana	plasma membrane, vacuole	48.93	52.02
Zm00001d053446_P001	Maize	plastid	49.68	51.85
Zm00001d016160_P001	Maize	plasma membrane	45.39	51.58
HORVU3Hr1G028670.16	Barley	plasma membrane	45.13	50.35
TraesCS3B01G167100.1	Wheat	plasma membrane	45.51	50.07
TraesCS3A01G132400.1	Wheat	plasma membrane	45.39	49.93
TraesCS3D01G148600.1	Wheat	plasma membrane	45.39	49.93
Solyc03g058900.1.1	Tomato	cytosol	12.26	49.74
Zm00001d039386_P001	Maize	plasma membrane	38.05	46.45
KRH58233	Soybean	cytosol, extracellular, plasma membrane	12.52	44.59
VIT_11s0016g04750.t01	Wine grape	plasma membrane	48.93	44.38
PGSC0003DMT400024866	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.18	44.29
PGSC0003DMT400054318	Potato	nucleus	17.45	43.81
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	34.01	42.63
VIT_04s0008g04990.t01	Wine grape	mitochondrion	48.17	42.43
VIT_14s0006g00230.t01	Wine grape	extracellular	6.83	38.57
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	39.95	37.66
Zm00001d012717_P002	Maize	plasma membrane	42.98	32.98
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	26.17	28.32
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	28.07	27.04
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	27.81	26.32
VIT_18s0089g01300.t01	Wine grape	plasma membrane	24.27	26.3

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:100233105	wikigene:100233105	Gene3D:2.60.120.10	MapMan:24.3.2.2
ProteinID:AAL09479	ProteinID:AAL09479.1	ProteinID:AAL24466	ProteinID:AAL24466.1	EMBL:AF359521	EMBL:AF359522
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CCB55787	ProteinID:CCB55787.1	UniProt:F6HLR3
EMBL:FN595992	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249
GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805
InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770
InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834
PFAM:PF13857	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490
PANTHER:PTHR10217	PANTHER:PTHR10217:SF551	InterPro:RmlC-like_jellyroll	EntrezGene:SIRK	wikigene:SIRK	SMART:SM00100
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TIGR:TC51690	TMHMM:TMhelix
UniParc:UPI00019841E0	ArrayExpress:VIT_10s0003g03270	EnsemblPlantsGene:VIT_10s0003g03270	EnsemblPlants:VIT_10s0003g03270.t01	unigene:Vvi.7	InterPro:cNMP-bd-like
InterPro:cNMP-bd_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:5452532..5456972

Molecular Weight (calculated)

89205.8 Da

IEP (calculated)

6.814

GRAVY (calculated)

-0.136

Length

791 amino acids

Sequence
(BLAST)

001: MSFSCAKAFF QRFCVEEFQM ERTSLGSVFS SHLLPSLGAR INQATKLQKH IISPFSPRYR AWEMLLIILV IYSAWICPFE FGFLPYKQDA LFIFDNIVNG
101: FFAIDIVLTF FVAYLDTETY LLVDDAKKIA IRYISTWFIF DVCSTAPFEA FSLLFTKHNS GLGYKALNML RLWRLRRVSS LFARLEKDIR FNYFWIRCIK
201: LTSVTLFAVH CAGCFNYLIA DRYPDPERTW IGAVYPNFKE ENLWDRYVTS IYWSITTLTT TGYGDLHAEN PREMLFDIFY MLFNLGLTSY LIGNMTNLVV
301: HWTSRTRDFR DTVRSASEFA TRNQLPPRIQ DQMLSHLCLK FKTEGLKQQD TLNGLPRAIR SSIAHYLFFP IAQNVYLFQG VSQDFLFQLV SEVEAEYFPP
401: REDVILQKEA PTDIYILVSG AVDLIAYIDG HDQILGKAVA GDVFGEIGVL CYRPQSLTVR TSELSQILRL SRTSLMNAIQ ANMEDGQIIM NNLFKKLKGL
501: ESSGFTDPHM DPESILREWI DGVPPGGSLS HAGCHDQSPH GDPSIQEARD IGLLGSEATK KSKADKAHES TGCGIDANSA AEDGQTALHV AVCNGHLEMV
601: RILLERGANV NKKDARGWTP KALAEQEGKK SIYDLLLSYE NRRLLDEHKI HFIGSGAADC CTSQGLHTRT GGPNFHNSQF KKVSTNSNSG SPSPPGNKDV
701: MTLTKRRVTI HRQFQNASTS QGQFGKLIIL PDSIEELLQI AGQKFGGYNP TKVVSAGNAE IDDISVIRDG DHLFLLQNEN ETTITMLPNG Y

Best Arabidopsis Sequence Match ( AT5G46240.1 )
(BLAST)

001: MSISWTRNFF ERFCVEEYNI DTIKQSSFLS ADLLPSLGAR INQSTKLRKH IISPFNPRYR AWEMWLVLLV IYSAWICPFQ FAFITYKKDA IFIIDNIVNG
101: FFAIDIILTF FVAYLDSHSY LLVDSPKKIA IRYLSTWFAF DVCSTAPFQP LSLLFNYNGS ELGFRILSML RLWRLRRVSS LFARLEKDIR FNYFWIRCTK
201: LISVTLFAIH CAGCFNYLIA DRYPNPRKTW IGAVYPNFKE ASLWNRYVTA LYWSITTLTT TGYGDFHAEN PREMLFDIFF MMFNLGLTAY LIGNMTNLVV
301: HWTSRTRTFR DSVRAASEFA SRNQLPHDIQ DQMLSHICLK FKTEGLKQQE TLNNLPKAIR SSIANYLFFP IVHNIYLFQG VSRNFLFQLV SDIDAEYFPP
401: KEDIILQNEA PTDLYILVSG AVDFTVYVDG HDQFQGKAVI GETFGEVGVL YYRPQPFTVR TTELSQILRI SRTSLMSAMH AHADDGRVIM NNLFMKLRGQ
501: QSIAIDDSNT SGHENRDFKS MGWEEWRDSR KDGYGLDVTN PTSDTALMDA IHKEDTEMVK KILKEQKIER AKVERSSSET AGRSYANDSS KKDPYCSSSN
601: QIIKPCKREE KRVTIHMMSE SKNGKLILLP SSIEELLRLA SEKFGGCNFT KITNADNAEI DDLDVIWDGD HLYFSSN

Arabidopsis Description

KAT1At5g46240 [Source:UniProtKB/TrEMBL;Acc:Q67YG3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.