Factsheet for VIT_17s0000g01980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

cytosol 1
plasma membrane 4
nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	96.17	84.09
VIT_14s0006g00230.t01	Wine grape	extracellular	13.54	70.71
Solyc03g097940.2.1	Tomato	plasma membrane	68.26	64.22
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	68.4	60.9
TraesCS7B01G106800.1	Wheat	cytosol	47.88	59.52
HORVU7Hr1G040990.20	Barley	endoplasmic reticulum, plasma membrane	63.2	58.04
KRH60563	Soybean	mitochondrion, plasma membrane	60.88	57.12
HORVU7Hr1G040880.7	Barley	cytosol, plasma membrane	60.19	56.85
TraesCS7D01G203200.1	Wheat	cytosol, plasma membrane, vacuole	63.2	56.2
TraesCS7B01G106900.1	Wheat	cytosol, plasma membrane, vacuole	63.2	55.33
TraesCS7A01G200200.1	Wheat	cytosol, plasma membrane, vacuole	63.06	55.01
Os06t0250600-01	Rice	cytosol	64.57	55.01
TraesCS7A01G200100.1	Wheat	cytosol	62.24	54.69
TraesCS7D01G203100.1	Wheat	cytosol	61.83	54.52
KXG19708	Sorghum	cytosol	63.47	54.33
TraesCS7D01G202900.1	Wheat	plasma membrane	60.74	54.28
Zm00001d037289_P002	Maize	cytosol	64.3	53.9
TraesCS7B01G106600.1	Wheat	cytosol	54.04	53.81
Zm00001d044717_P001	Maize	cytosol	63.61	52.9
TraesCS7A01G199900.1	Wheat	cytosol	60.33	51.94
VIT_18s0089g01300.t01	Wine grape	plasma membrane	50.75	50.82
GSMUA_Achr8P22960_001	Banana	nucleus, peroxisome, plasma membrane	20.25	49.33
HORVU7Hr1G040970.5	Barley	cytosol	61.29	46.96
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	31.05	27.06
VIT_11s0016g04750.t01	Wine grape	plasma membrane	31.74	26.61
VIT_10s0003g03270.t01	Wine grape	plasma membrane	28.32	26.17
VIT_04s0008g04990.t01	Wine grape	mitochondrion	31.6	25.72
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	21.75	25.2

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CCB43301	ProteinID:CCB43301.1	UniProt:F6GSP6	EMBL:FN594950
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005249	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006811
GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710
InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG
PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PFAM:PF13857	PRINTS:PR01415
PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217
PANTHER:PTHR10217:SF514	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206
SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI00021094D7	ArrayExpress:VIT_17s0000g01980	EnsemblPlantsGene:VIT_17s0000g01980	EnsemblPlants:VIT_17s0000g01980.t01
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	:	:	:	:

Description

No Description!

Coordinates

chr17:+:1553776..1569563

Molecular Weight (calculated)

83028.8 Da

IEP (calculated)

6.957

GRAVY (calculated)

-0.055

Length

731 amino acids

Sequence
(BLAST)

001: MEFGFFRGLP ENLFLLDIAG QLAFLVDMVV RFFVAFRDTQ SYTTVDSHKR IALRYLKSRF VVDFLGCLPL DAIYQVSFCG RKEPVRYLLW IRLSRALRVT
101: EFFEKLEKDI RINYLFTRIV KLLVVELYCT HAAACIFYYL ATTMPASQEG YTWIGSLKMG DYSYSHFRDI DLWKRYFTSL YFAIVTMATV GYGDIHAVNV
201: REMLFVMAYV SFDMILGAYL LGNMTALIVK GSKTEKFRDR MAELISYMNR NKLGRQISNE IKHHMRSQYE TSYTEAALLQ DIPVSIRAKI SQKLYGPYIS
301: KVSLFKGCSP GFLKQIATRV HEEIFLPGEV ILEEGNMVDQ LYIVCNGKLK GVGSNEDETE GPLIHLQTND SFGEIPLLCN TPQAYTVQVV ELCRLVRLDK
401: QSFINILEIY FSDGRIILNN LLEGKGSNLR NKILESDITL YIGKREAEVA MRVNCAAYNG DLYQLRRLIE ARADPNKTDY NGRSPLHFAA SKGYEDITDY
501: LIELRVNIHL SDNFGNTPLL EAIKNGHDGV TSLLVKSGAL LTVEDAGNCL CMTVVRRDLN FLKRLLANGI NPNAKNYDSR TPLHLAASEG LYSMTNLLLE
601: AGASVLAKDR WGNTPLDEAR IGGNKNLIKL LEEAMSAQLS EFSSCSQEIR ADKMRQRKCT VFPFHPWDSK EERKQGVVLW IPKTIEELIE TAMDQLKCSS
701: GSCILSENGA KIIDIDMVSD EEKLFLVAET I

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.