Factsheet for VIT_12s0034g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, mitochondrion

Predictor Summary:

plastid 2
plasma membrane 1
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g04510.t01
VIT_10s0003g03270.t01
VIT_11s0016g04750.t01
VIT_12s0034g02240.t01
VIT_13s0019g02200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	VIT_11s0016g04750.t01	AT2G26650.1	12678562
AT4G22200.1	VIT_11s0016g04750.t01	AT2G26650.1	15299147
AT4G22200.1	VIT_13s0019g02200.t01	AT3G11410.1	11181729
AT4G22200.1	VIT_13s0019g02200.t01	AT3G11410.1	12034902
AT4G22200.1	VIT_12s0034g02240.t01	AT4G22200.1	12678562
AT4G22200.1	VIT_12s0034g02240.t01	AT4G22200.1	15299147
AT4G22200.1	VIT_12s0034g02240.t01	AT4G22200.1	17085433
AT4G22200.1	VIT_04s0008g04510.t01	AT4G32650.1	12678562
AT4G22200.1	VIT_10s0003g03270.t01	AT5G46240.1	12034902
AT4G22200.1	VIT_10s0003g03270.t01	AT5G46240.1	15299147
AT4G22200.1	VIT_10s0003g03270.t01	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44060	Soybean	cytosol	73.06	73.5
KRH26375	Soybean	cytosol	72.35	73.04
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	67.22	70.32
CDX79135	Canola	plasma membrane	65.55	69.8
PGSC0003DMT400061090	Potato	cytosol	67.7	68.93
Solyc01g104030.2.1	Tomato	cytosol	68.53	68.7
PGSC0003DMT400062100	Potato	plasma membrane	66.87	66.63
GSMUA_Achr6P24240_001	Banana	cytosol	63.17	66.25
Solyc10g024360.1.1	Tomato	cytosol	65.55	65.4
Bra013599.1-P	Field mustard	cytosol	65.55	63.81
CDX82921	Canola	cytosol	64.96	63.23
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	61.62	62.74
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	50.66	61.15
Zm00001d010210_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	49.34	59.23
EES19575	Sorghum	plastid	58.28	58.42
KXG22064	Sorghum	plastid	58.05	57.84
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	59.59	57.8
TraesCS1D01G267800.1	Wheat	plastid	59.59	57.8
TraesCS1A01G267900.1	Wheat	plastid	59.48	57.49
Os05t0428700-01	Rice	cytosol, plastid	38.74	57.42
TraesCS6B01G081300.1	Wheat	plastid	56.85	57.06
HORVU1Hr1G065250.2	Barley	plastid	59.48	56.19
KXG22062	Sorghum	plastid	10.49	55.35
Zm00001d010209_P001	Maize	plastid	8.94	53.57
Zm00001d038252_P001	Maize	plastid	58.88	52.89
VIT_11s0016g04750.t01	Wine grape	plasma membrane	43.03	41.4
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	30.51	40.57
VIT_10s0003g03270.t01	Wine grape	plasma membrane	37.66	39.95
VIT_04s0008g04990.t01	Wine grape	mitochondrion	41.95	39.2
VIT_14s0006g00230.t01	Wine grape	extracellular	5.84	35.0
VIT_17s0000g01980.t01	Wine grape	golgi, plasma membrane	27.06	31.05
VIT_18s0089g01300.t01	Wine grape	plasma membrane	25.86	29.73
VIT_14s0006g00100.t01	Wine grape	cytosol, plasma membrane, plastid	27.77	28.38
VIT_11s0016g05810.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	28.01	28.11

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	EntrezGene:100261806	wikigene:100261806	Gene3D:2.60.120.10	MapMan:24.3.2.2
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CCB48672	ProteinID:CCB48672.1	UniProt:F6H931
EMBL:FN595497	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249
GO:GO:0005267	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0042802
GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683
InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	EntrezGene:LOC100261806
wikigene:LOC100261806	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415
PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217
PANTHER:PTHR10217:SF493	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206
SUPFAM:SSF81324	TIGR:TC60555	TMHMM:TMhelix	UniParc:UPI00015CA908	ArrayExpress:VIT_12s0034g02240	EnsemblPlantsGene:VIT_12s0034g02240
EnsemblPlants:VIT_12s0034g02240.t01	unigene:Vvi.6047	RefSeq:XP_002268924	RefSeq:XP_002268924.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:18664082..18670677

Molecular Weight (calculated)

95771.7 Da

IEP (calculated)

7.903

GRAVY (calculated)

-0.103

Length

839 amino acids

Sequence
(BLAST)

001: MKVPHQLYSL YSASNMIKRE DHSRKSLKKP EEKQHDDSKP FNSRNLSKVI LPPLGVSSYN QNPLAPKGWI ISPMDSRYRC WETFMVVLVA YSLWIYPFQV
101: AFLKASPNRQ LYITDNVVDL FFAVDIVLTF FVAYIDRRTQ LLVCDWRKIA VRYLSTWFLM DMASTMPFEA LGSLITGKQK VGLSYSLLGL LRFWRLRRVK
201: QLFTRLEKDI RFSYFWVRCA RLLSVTLFLV HCAGCLYYLL ADRYPHQGKT WIGAVIPNFR ETSLWIRYIS ALYWSITTMT TVGYGDMHAV NTMEMIFIIF
301: YMLFNLGLTA YLIGNMTNLV VEGTRRTMEF RNSIEAASNF VCRNRLPPRL KEQILAYMCL RFKAESLNQH QLIEQLPKSI CKSICQHLFL PTVEKVYLFK
401: GISREILLLL VAKMKAEYIP PREDVIMQNE APDDVYIIVS GEVEIIDYEG EKEHVVGTLQ SADMFGEVGA LCCRPQTYTF RTKTLSQLLR LKTSALIEAM
501: QTKKEDNVII LKNFLQHHKR LKDLNIGDLL VENGEEDVNP NMAFNLLTVA STGNAAFLDE LLKAKLDPDI GDSKGRTPLH IAASKGHEDC VMVLLKHACN
601: VHVRDINGNT ALWDAVSAKH NSIFWILYHC ASLSDPYTSG DLLCTAAKRN DLTAMKELLK QGLNIDSKNR QGLTAIQIAM AEDHTDMVKL LVMNGADVIH
701: ANTYEFSSET LNEMLQKREM GHRIMVPDTL PTDHETLLRD QGGEKEFNTN GGFKGTNVPR VSIYRGHPLQ RKESCCTEAG RLIRLPNSLM ELKAIAGEKL
801: GFDARNAMVT NEEGAEIDSI EVIRDNDTLF LVEDPNSLM

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [cytosol,vacuole,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.