Factsheet for PGSC0003DMT400062100

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002746
PGSC0003DMT400024866
PGSC0003DMT400024968
PGSC0003DMT400037608
PGSC0003DMT400043146
PGSC0003DMT400054318
PGSC0003DMT400054339
PGSC0003DMT400061090
PGSC0003DMT400062100
PGSC0003DMT400065964
PGSC0003DMT400069947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	PGSC0003DMT400002746	AT2G26650.1	12678562
AT4G22200.1	PGSC0003DMT400002746	AT2G26650.1	15299147
AT4G22200.1	PGSC0003DMT400043146	AT3G11410.1	11181729
AT4G22200.1	PGSC0003DMT400069947	AT3G11410.1	11181729
AT4G22200.1	PGSC0003DMT400043146	AT3G11410.1	12034902
AT4G22200.1	PGSC0003DMT400069947	AT3G11410.1	12034902
AT4G22200.1	PGSC0003DMT400061090	AT4G22200.1	12678562
AT4G22200.1	PGSC0003DMT400062100	AT4G22200.1	12678562
AT4G22200.1	PGSC0003DMT400061090	AT4G22200.1	15299147
AT4G22200.1	PGSC0003DMT400062100	AT4G22200.1	15299147
AT4G22200.1	PGSC0003DMT400061090	AT4G22200.1	17085433
AT4G22200.1	PGSC0003DMT400062100	AT4G22200.1	17085433
AT4G22200.1	PGSC0003DMT400037608	AT4G32650.1	12678562
AT4G22200.1	PGSC0003DMT400065964	AT4G32650.1	12678562
AT4G22200.1	PGSC0003DMT400024866	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400024968	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400054318	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400054339	AT5G46240.1	12034902
AT4G22200.1	PGSC0003DMT400024866	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400024968	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400054318	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400054339	AT5G46240.1	15299147
AT4G22200.1	PGSC0003DMT400024866	AT5G46240.1	17085433
AT4G22200.1	PGSC0003DMT400024968	AT5G46240.1	17085433
AT4G22200.1	PGSC0003DMT400054318	AT5G46240.1	17085433
AT4G22200.1	PGSC0003DMT400054339	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g024360.1.1	Tomato	cytosol	94.54	94.65
PGSC0003DMT400061090	Potato	cytosol	74.82	76.46
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	66.63	66.87
KRH26375	Soybean	cytosol	64.13	64.98
CDX79135	Canola	plasma membrane	60.69	64.85
KRH44060	Soybean	cytosol	63.9	64.51
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	61.4	64.46
GSMUA_Achr6P24240_001	Banana	cytosol	57.01	60.0
Bra013599.1-P	Field mustard	cytosol	60.69	59.28
CDX82921	Canola	cytosol	60.45	59.05
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	55.82	57.04
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	46.91	56.83
Zm00001d010210_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	45.84	55.22
EES19575	Sorghum	plastid	53.92	54.24
TraesCS1D01G267800.1	Wheat	plastid	54.63	53.18
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	54.51	53.06
TraesCS1A01G267900.1	Wheat	plastid	54.51	52.88
KXG22064	Sorghum	plastid	52.85	52.85
Os05t0428700-01	Rice	cytosol, plastid	35.27	52.47
TraesCS6B01G081300.1	Wheat	plastid	51.66	52.03
HORVU1Hr1G065250.2	Barley	plastid	54.28	51.46
KXG22062	Sorghum	plastid	9.62	50.94
Zm00001d038252_P001	Maize	plastid	53.21	47.97
Zm00001d010209_P001	Maize	plastid	7.72	46.43
PGSC0003DMT400054339	Potato	plasma membrane	34.09	41.72
PGSC0003DMT400037608	Potato	plastid	29.93	40.45
PGSC0003DMT400024968	Potato	cytosol, plasma membrane, vacuole	33.02	40.35
PGSC0003DMT400091020	Potato	peroxisome, plasma membrane	29.22	40.26
PGSC0003DMT400065964	Potato	cytosol, plastid	29.81	39.78
PGSC0003DMT400002746	Potato	plasma membrane	40.62	39.13
PGSC0003DMT400074787	Potato	cytosol, nucleus, plasma membrane	38.72	37.86
PGSC0003DMT400054318	Potato	nucleus	11.88	31.75
PGSC0003DMT400034446	Potato	cytosol	26.84	27.29
PGSC0003DMT400024866	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.26	26.99

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAA70870	ProteinID:CAA70870.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595
InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom
InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	UniProt:M1C8I1	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834
PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400024168	PGSC:PGSC0003DMG400024168	EnsemblPlants:PGSC0003DMT400062100	PRINTS:PR01415	PRINTS:PR01463
PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF493
InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324
TMHMM:TMhelix	UniParc:UPI0002953474	EMBL:Y09699	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg

Description

Inward rectifying potassium channel [Source:PGSC_GENE;Acc:PGSC0003DMG400024168]

Coordinates

chr10:-:27377725..27383564

Molecular Weight (calculated)

96740.8 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.202

Length

842 amino acids

Sequence
(BLAST)

001: MEVKYSSDGF YNRNMSDGDG EKIQTKEDMY NNNNNNERGG NSGLGNMSFH NLSKLILPPL GSSGYNQNQT DLHKGNTISP ITSTYRCWET LMVLLVAYCA
101: WVCPFEIAFM NLNPNKKLYI ADNIVNLFFA ADIILTFSVA YIDSTSQLLV RDRRKIATRY VSTWFLMDVA STIPFDLLAM LFTGKHQVGI SYSVLGILRF
201: WRLRKVKQFF TRLEKDMRFS YFWIRCARLL FVTLFSVHCA GCLYYLLADR YPHQGNTWLG SVNPKFRETS LWIRYISAIY WSITTMTTVG YGDLHAVNTV
301: EMIFIIFYML FNLGLTAYII GNMTNLVVEG TSRTMEFRNS IQSASNFVSR NHLPPRLKEQ ILAYMCLRFK AESLNQQQLI EQLPKTICKS IRHHLFLPTV
401: EKVYLFKGIS REILLHLVAD MKAEYIPPRE DVIMQNESPD EVYIIVSGEV EMIDSEMENE QIVWTLRCGD MFGEVGAFCC RPQSYTYRTR TLSQLLKIRT
501: SSLIEAMKSR QEDNVTMMKN FLQHHKKLKD LRLTDLFLDV GDEDSDPNMS INLLTVASTG NAAFLDELLK ARLDPNICDS KGKTPLHIAA SKGHEECVMV
601: LLRHGCNIHL QDVNGDTALW EAIAAKQHPI FEILYHWACI SDPYVSGDLL CKAARRNELT IMKELLKHGL LVNSNDRHRS TAIHVAIEEN HLEMVKLLLL
701: NGDEIDDTLK DKLSSMNLSE MLQKQDVGHR IIISDTMDEV DHKEHEQEQK YDFESHTDQC AFRVSIYRGH PEFRRRTQCN EPGRLIKLPD SLAKLKGIAG
801: QKFGFEAKDA LVTNEEGAEI DSVEVIRDND KLYIVEYTNS IM

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.