CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92493
EER96576
EES01496
EES01744
EES03354
EES06576
EES07044
EES19575
KXG22060
KXG22062
KXG22064
KXG22152
KXG35986
OQU87429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	EES03354	AT2G26650.1	12678562
AT4G22200.1	EES03354	AT2G26650.1	15299147
AT4G22200.1	EER92493	AT3G11410.1	11181729
AT4G22200.1	EER96576	AT3G11410.1	11181729
AT4G22200.1	EES01744	AT3G11410.1	11181729
AT4G22200.1	KXG22152	AT3G11410.1	11181729
AT4G22200.1	KXG35986	AT3G11410.1	11181729
AT4G22200.1	EER92493	AT3G11410.1	12034902
AT4G22200.1	EER96576	AT3G11410.1	12034902
AT4G22200.1	EES01744	AT3G11410.1	12034902
AT4G22200.1	KXG22152	AT3G11410.1	12034902
AT4G22200.1	KXG35986	AT3G11410.1	12034902
AT4G22200.1	EES19575	AT4G22200.1	12678562
AT4G22200.1	KXG22060	AT4G22200.1	12678562
AT4G22200.1	KXG22062	AT4G22200.1	12678562
AT4G22200.1	KXG22064	AT4G22200.1	12678562
AT4G22200.1	EES19575	AT4G22200.1	15299147
AT4G22200.1	KXG22060	AT4G22200.1	15299147
AT4G22200.1	KXG22062	AT4G22200.1	15299147
AT4G22200.1	KXG22064	AT4G22200.1	15299147
AT4G22200.1	EES19575	AT4G22200.1	17085433
AT4G22200.1	KXG22060	AT4G22200.1	17085433
AT4G22200.1	KXG22062	AT4G22200.1	17085433
AT4G22200.1	KXG22064	AT4G22200.1	17085433
AT4G22200.1	EES07044	AT4G32650.1	12678562
AT4G22200.1	OQU87429	AT4G32650.1	12678562
AT4G22200.1	EES01496	AT5G46240.1	12034902
AT4G22200.1	EES06576	AT5G46240.1	12034902
AT4G22200.1	EES01496	AT5G46240.1	15299147
AT4G22200.1	EES06576	AT5G46240.1	15299147
AT4G22200.1	EES01496	AT5G46240.1	17085433
AT4G22200.1	EES06576	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	74.19	89.35
KXG22064	Sorghum	plastid	87.1	86.58
KXG22062	Sorghum	plastid	15.29	80.5
Zm00001d038252_P001	Maize	plastid	86.14	77.19
Os05t0428700-01	Rice	cytosol, plastid	50.54	74.73
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	73.6	71.21
TraesCS1D01G267800.1	Wheat	plastid	73.48	71.1
TraesCS1A01G267900.1	Wheat	plastid	73.24	70.62
HORVU1Hr1G065250.2	Barley	plastid	73.12	68.92
TraesCS6B01G081300.1	Wheat	plastid	66.79	66.87
GSMUA_Achr6P24240_001	Banana	cytosol	59.62	62.38
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	58.18	59.1
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	58.42	58.28
KRH26375	Soybean	cytosol	57.35	57.76
CDX79135	Canola	plasma membrane	54.24	57.61
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	54.84	57.23
KRH44060	Soybean	cytosol	56.63	56.83
PGSC0003DMT400061090	Potato	cytosol	54.12	54.98
Solyc01g104030.2.1	Tomato	cytosol	54.84	54.84
PGSC0003DMT400062100	Potato	plasma membrane	54.24	53.92
Solyc10g024360.1.1	Tomato	cytosol	53.29	53.03
Bra013599.1-P	Field mustard	cytosol	54.24	52.67
CDX82921	Canola	cytosol	54.24	52.67
EES01496	Sorghum	mitochondrion, plasma membrane	28.67	45.28
EES06576	Sorghum	plasma membrane	34.77	39.92
EES03354	Sorghum	plastid	38.71	36.61
OQU87429	Sorghum	mitochondrion	26.28	35.2
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	24.97	34.78
EER95927	Sorghum	plastid	37.63	34.28
EES10868	Sorghum	cytosol	26.52	30.62
KXG19708	Sorghum	cytosol	28.79	28.22

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	EntrezGene:8058496	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	UniProt:C5YYC0	EnsemblPlants:EES19575	ProteinID:EES19575	ProteinID:EES19575.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0034765	GO:GO:0042391	GO:GO:0055085	GO:GO:0071805	InterPro:IPR000595
InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom
InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PFAM:PF12796
PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217
PANTHER:PTHR10217:SF493	InterPro:RmlC-like_jellyroll	SMART:SM00100	SMART:SM00248	EnsemblPlantsGene:SORBI_3009G147500	SUPFAM:SSF48403
SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0001A89480	RefSeq:XP_002441145.1	InterPro:cNMP-bd-like
InterPro:cNMP-bd_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:50441882..50451626

Molecular Weight (calculated)

93307.4 Da

IEP (calculated)

6.475

GRAVY (calculated)

-0.029

Length

837 amino acids

Sequence
(BLAST)

001: MKNNSSFQST GSAGGGGGSG TGERSGSGSL SLRYLSKIIL PPLGGPPGQS QSHGGSDKWV ISPLDSRYRW WDTLMVVLVA YSAWVYLFEV AFMNASPKGG
101: LEVADIVVDL FFAVDIVLTF FVAYIDPRTQ LLIRDRKKIT FRYLSTFFIM DVASTVPFQA LAYFITGEVR ENGAYSVLGL LRLWRLRRVN QFFTRLEKDI
201: RFSYFWIRCA RLVAVTLFVV HSAGCLYYLI ADRYPHPEKT WIGDVIPNFR QVSVWIRYIT SVYWSITTMT TVGYGDLHAR NTVEMIFNIF YMLFNLGLTA
301: YLIGNMTNLV VEGTHRTMEF RNSIRAATSF VGRNHLPPRL KQQILAYMCL KFRAESLNQQ QLMDQLPKSI CKSICDHLFV PVVKDVYLFN GVSREMLLSL
401: VTKMKPEYIP PREDVIVQNE APDDVYVVVS GEVEVILFNG INERVEATLG TRDIFGEVSA LSDRAQAFTF RTRTLSQLLR LKQATLKEAM QSRPEDNVVV
501: IKNFLKHQVE MHGMEVEDLL GDNTGEHDND ANVLTAAMMG NSGLLEDLLR AGKDADVGDA TGRTALHIAA AKVYEDCVLV LLKHACNVNI EDAQGNTAMW
601: NAIAAGHHRI FNILYQFSRA SNPHAGGDVL CLAARRGDLG MLRELLKLGL DVDSEDHDGA TALRVAMAEG HADVARFLIM NGASVDKASL DDDGSGSGTA
701: RRTMSSTELR ELLQKRELGH SITIVDSPAV IPDRLQSTGS NQQRWPRVSI YNGHPFLRNR SYEAGKLINL PGTMEEFIAT VGEKLKVDAE KVLIVNDEGA
801: EIDSIDVIRD NDKLFVVTGE DMRQLASMDS MSSSLCL

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.