CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88529
EER92405
EER93155
EES03354
EES04686
EES06532
EES19575
EES19683
KXG22060
KXG22062
KXG22064
OQU87775
OQU88438
OQU92088

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	OQU88438	AT1G30270.1	17898163
AT1G07430.1	EES03354	AT2G26650.1	17898163
AT1G07430.1	EER93155	AT3G06610.1	21798944
AT3G11410.1	EER88529	AT1G73000.1	19407142
AT3G11410.1	EES06532	AT1G73000.1	19407142
AT3G11410.1	EER88529	AT2G26040.1	19407142
AT3G11410.1	EES06532	AT2G26040.1	19407142
AT3G11410.1	EES04686	AT2G33610.1	19033529
AT3G11410.1	EER92405	AT2G38310.1	19407142
AT3G11410.1	EES19683	AT2G38310.1	19407142
AT3G11410.1	OQU87775	AT2G38310.1	19407142
AT3G11410.1	OQU92088	AT4G17870.1	19407142
AT3G11410.1	EES19575	AT4G22200.1	11181729
AT3G11410.1	KXG22060	AT4G22200.1	11181729
AT3G11410.1	KXG22062	AT4G22200.1	11181729
AT3G11410.1	KXG22064	AT4G22200.1	11181729
AT3G11410.1	EES19575	AT4G22200.1	12034902
AT3G11410.1	KXG22060	AT4G22200.1	12034902
AT3G11410.1	KXG22062	AT4G22200.1	12034902
AT3G11410.1	KXG22064	AT4G22200.1	12034902
AT3G11410.1	OQU92088	AT5G46790.1	19407142
AT5G59220.1	EER92405	AT2G38310.1	19407142
AT5G59220.1	EES19683	AT2G38310.1	19407142
AT5G59220.1	OQU87775	AT2G38310.1	19407142
AT5G59220.1	OQU92088	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028574_P001	Maize	nucleus	89.03	90.15
Os03t0268600-01	Rice	nucleus	76.56	75.99
HORVU4Hr1G060370.1	Barley	nucleus	74.31	74.5
TraesCS4B01G210100.1	Wheat	nucleus	73.57	72.66
TraesCS4A01G094300.1	Wheat	nucleus	74.06	72.62
TraesCS4D01G210900.1	Wheat	nucleus	73.82	72.2
GSMUA_AchrUn_...	Banana	cytosol	43.64	61.84
KXG35986	Sorghum	cytosol, peroxisome, plastid	30.92	61.08
GSMUA_Achr6P15180_001	Banana	cytosol	53.12	57.57
EER96576	Sorghum	cytosol	49.63	55.74
EES01744	Sorghum	plastid	55.11	53.64
CDY18067	Canola	cytosol	7.73	52.54
CDY67257	Canola	nucleus	47.88	51.75
CDY67227	Canola	cytosol	47.63	51.48
VIT_06s0004g05460.t01	Wine grape	nucleus	50.12	51.15
Bra002038.1-P	Field mustard	nucleus	48.13	50.79
KRH31027	Soybean	cytosol	50.62	50.62
KRH15068	Soybean	cytosol	49.88	50.0
VIT_13s0019g02200.t01	Wine grape	plastid	49.88	50.0
KRG97855	Soybean	cytosol	49.88	50.0
AT2G29380.1	Thale cress	nucleus	44.89	49.72
CDY01017	Canola	nucleus	48.63	49.62
CDY08530	Canola	nucleus	48.38	49.36
AT3G11410.1	Thale cress	cytosol	48.88	49.12
KRH73525	Soybean	cytosol, mitochondrion, peroxisome, plastid	12.97	49.06
Bra034845.1-P	Field mustard	nucleus	48.63	48.87
Bra002594.1-P	Field mustard	plastid	50.12	48.79
CDY45436	Canola	cytosol	44.39	48.63
Bra018398.1-P	Field mustard	cytosol	44.39	48.63
CDY40181	Canola	cytosol	44.39	48.63
Solyc05g052980.2.1	Tomato	nucleus	49.38	48.41
KRH73067	Soybean	cytosol	49.13	48.4
AT5G59220.1	Thale cress	nucleus	49.63	48.18
PGSC0003DMT400069947	Potato	cytosol	49.63	47.61
Solyc03g096670.2.1	Tomato	nucleus	47.88	47.29
CDX80307	Canola	nucleus, plastid	46.63	47.22
CDY06705	Canola	nucleus	45.89	47.18
CDY33008	Canola	nucleus, plastid	46.38	47.09
PGSC0003DMT400043146	Potato	nucleus	47.88	46.83
PGSC0003DMT400077989	Potato	cytosol	46.38	45.37
KXG22152	Sorghum	nucleus	52.37	45.26
Solyc06g076400.2.1	Tomato	nucleus	45.89	44.88
CDY10275	Canola	nucleus	47.63	44.42
Bra015579.1-P	Field mustard	nucleus	47.13	44.37
AT1G07430.1	Thale cress	nucleus	48.38	43.89
OQU78453	Sorghum	nucleus	42.39	43.04
Bra031574.1-P	Field mustard	nucleus	46.38	42.66
CDY06259	Canola	nucleus	46.13	42.43
Bra030455.1-P	Field mustard	cytosol	15.21	38.36
KXG22422	Sorghum	cytosol, nucleus, plastid	34.66	36.58
OQU87413	Sorghum	cytosol	34.16	35.77
KXG33023	Sorghum	nucleus	40.65	34.39
CDY36606	Canola	nucleus	20.7	33.2
KXG22681	Sorghum	cytosol	35.16	32.94
EES11811	Sorghum	plastid	38.65	31.7
EES00964	Sorghum	peroxisome, plasma membrane, vacuole	34.91	29.05
OQU90183	Sorghum	mitochondrion	19.45	27.46
OQU86100	Sorghum	nucleus	16.21	16.29
PGSC0003DMT400049695	Potato	extracellular	2.99	10.91
KXG28797	Sorghum	golgi, plasma membrane, vacuole	22.19	8.34

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	EntrezGene:8084948	UniProt:C5WQ29	ncoils:Coil
EnsemblPlants:EER92493	ProteinID:EER92493	ProteinID:EER92493.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721
GO:GO:0004722	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006470	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009845	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	GO:GO:0090351	InterPro:IPR001932
InterPro:IPR036457	ProteinID:KXG39710.1	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SMART:SM00332
EnsemblPlantsGene:SORBI_3001G424400	SUPFAM:SSF81606	unigene:Sbi.3467	UniParc:UPI0001A82CF1	RefSeq:XP_002465495.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:70449095..70456551

Molecular Weight (calculated)

42788.0 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.450

Length

401 amino acids

Sequence
(BLAST)

001: MAEICCEVAA TGSDRKGECV GGDAGSRAAR KRRMEIRRLR VVAEEASAKR RRLEADEEDA VRRPAPRYGV TSVCGRRRDM EDAVTTRLGF IDGHHFFGVF
101: DGHGCSHVAT SCGQRMHQIV AEEATAAAGS SASDDAARWR DVMEKSYSRM DAEAVGSRDT AGPAPTCRCE MQLPKCDHVG STAVVAVVGP RHLVVANCGD
201: SRAVLCSGGA AIPLSDDHKP DRPDELERIH AAGGRVIFWD GARVFGMLAM SRAIGDSYLK PFVISDPEVR VVERKDGEDE FLILASDGLW DVVSNEVACK
301: VVRTCLRNRA PPHPHGGDGE RSSPTSNLSP RQSSGSGSSS GDEEGAGPSD GAGSESDGDG ESSEDRACSE AAILLTKLAL ARQTADNVSV VVVNLRRRRR
401: S

Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)

001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA

Arabidopsis Description

AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.