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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX76554
CDX76731
CDX77691
CDX79135
CDX82120
CDX82921
CDX90440
CDY01498
CDY03194
CDY07739
CDY08877
CDY11503
CDY14471
CDY22516
CDY23721
CDY37705
CDY48030
CDY58053
CDY58505
CDY68316
CDY68675
CDY69797
CDY70860

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11410.1 CDX82120 AT1G73000.1 19407142
AT3G11410.1 CDY22516 AT1G73000.1 19407142
AT3G11410.1 CDY48030 AT1G73000.1 19407142
AT3G11410.1 CDX76731 AT2G26040.1 19407142
AT3G11410.1 CDY11503 AT2G26040.1 19407142
AT3G11410.1 CDY23721 AT2G33610.1 19033529
AT3G11410.1 CDY37705 AT2G33610.1 19033529
AT3G11410.1 CDY07739 AT2G38310.1 19407142
AT3G11410.1 CDY14471 AT2G38310.1 19407142
AT3G11410.1 CDX76554 AT4G17870.1 19407142
AT3G11410.1 CDX90440 AT4G17870.1 19407142
AT3G11410.1 CDY01498 AT4G17870.1 19407142
AT3G11410.1 CDY08877 AT4G17870.1 19407142
AT3G11410.1 CDY69797 AT4G17870.1 19407142
AT3G11410.1 CDY70860 AT4G17870.1 19407142
AT3G11410.1 CDX79135 AT4G22200.1 11181729
AT3G11410.1 CDX82921 AT4G22200.1 11181729
AT3G11410.1 CDX79135 AT4G22200.1 12034902
AT3G11410.1 CDX82921 AT4G22200.1 12034902
AT3G11410.1 CDY58053 AT5G45870.1 19407142
AT3G11410.1 CDY68675 AT5G45870.1 19407142
AT3G11410.1 CDX77691 AT5G46790.1 19407142
AT3G11410.1 CDY03194 AT5G46790.1 19407142
AT3G11410.1 CDY58505 AT5G46790.1 19407142
AT3G11410.1 CDY68316 AT5G46790.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08530 Canola nucleus 98.47 98.47
Bra034845.1-P Field mustard nucleus 95.17 93.73
CDY67227 Canola cytosol 82.95 87.87
CDY67257 Canola nucleus 82.7 87.6
AT3G11410.1 Thale cress cytosol 83.72 82.46
CDY18067 Canola cytosol 10.18 67.8
Solyc05g052980.2.1 Tomato nucleus 62.09 59.66
GSMUA_AchrUn_... Banana cytosol 42.75 59.36
PGSC0003DMT400069947 Potato cytosol 62.34 58.61
VIT_13s0019g02200.t01 Wine grape plastid 59.03 58.0
KXG35986 Sorghum cytosol, peroxisome, plastid 29.26 56.65
Solyc03g096670.2.1 Tomato nucleus 57.76 55.91
PGSC0003DMT400043146 Potato nucleus 58.02 55.61
CDY45436 Canola cytosol 50.89 54.64
CDY40181 Canola cytosol 50.64 54.37
KRH73525 Soybean cytosol, mitochondrion, peroxisome, plastid 14.5 53.77
Zm00001d005609_P001 Maize cytosol, mitochondrion, nucleus, plastid 47.07 52.86
TraesCS5A01G183600.1 Wheat peroxisome 46.56 52.44
GSMUA_Achr6P15180_001 Banana cytosol 49.11 52.16
EER96576 Sorghum cytosol 47.33 52.1
CDY06705 Canola nucleus 51.65 52.05
TraesCS5D01G188600.1 Wheat peroxisome 45.8 51.58
Zm00001d020100_P001 Maize mitochondrion, nucleus, peroxisome, plastid 46.82 51.4
Os09t0325700-01 Rice cytosol 46.82 51.4
GSMUA_Achr5P29000_001 Banana cytosol 49.87 51.31
TraesCS5B01G182000.1 Wheat peroxisome 45.55 51.29
GSMUA_Achr11P... Banana cytosol 50.89 50.63
TraesCS3D01G355900.1 Wheat plastid 50.38 49.87
TraesCS3A01G362200.1 Wheat nucleus, plastid 49.62 49.87
CDY33008 Canola nucleus, plastid 49.87 49.62
HORVU3Hr1G085930.3 Barley nucleus, plastid 49.62 49.62
HORVU4Hr1G060370.1 Barley nucleus 50.38 49.5
CDX80307 Canola nucleus, plastid 49.87 49.49
TraesCS4B01G210100.1 Wheat nucleus 50.64 49.01
Os03t0268600-01 Rice nucleus 50.13 48.76
Zm00001d028574_P001 Maize nucleus 49.11 48.74
EER92493 Sorghum nucleus 49.62 48.63
TraesCS4D01G210900.1 Wheat nucleus 50.38 48.29
CDY10275 Canola nucleus 52.42 47.91
Os01t0846300-01 Rice cytosol, mitochondrion, nucleus, plastid 50.38 47.83
EES01744 Sorghum plastid 49.62 47.33
Zm00001d042886_P001 Maize nucleus 49.11 47.3
Zm00001d012401_P001 Maize cytosol, mitochondrion, nucleus, plastid 49.62 47.22
TraesCS4A01G094300.1 Wheat nucleus 48.85 46.94
TraesCS3B01G394600.3 Wheat plastid 50.13 46.03
CDY06259 Canola nucleus 50.13 45.18
CDY50002 Canola cytosol 18.83 43.27
KXG22152 Sorghum nucleus 49.11 41.59
CDX83901 Canola cytosol 34.86 39.14
CDX96761 Canola cytosol 34.61 38.86
CDX92752 Canola cytosol 38.17 36.59
CDY42756 Canola cytosol 38.17 36.32
CDX94382 Canola cytosol 38.68 36.19
CDY50003 Canola nucleus 37.66 36.1
CDY38877 Canola cytosol 36.64 35.47
CDX89368 Canola cytosol 38.42 35.45
CDY14318 Canola nucleus 37.91 35.31
CDY36606 Canola nucleus 22.14 34.8
CDY38260 Canola cytosol 37.15 34.6
CDY54381 Canola cytosol, mitochondrion, plastid 37.15 34.52
CDY32620 Canola cytosol 33.84 34.02
CDX72943 Canola cytosol, peroxisome, plastid 36.64 30.32
CDX96432 Canola cytosol, peroxisome, plastid 37.15 30.17
CDY26234 Canola cytosol 37.4 29.64
CDY48313 Canola cytosol 37.4 29.34
CDY53715 Canola plasma membrane, vacuole 22.14 8.41
CDX93912 Canola plasma membrane, vacuole 22.14 8.4
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:18.4.24.2.1Gene3D:3.60.40.10GO:A0A078EIS1EnsemblPlants:CDY01017
ProteinID:CDY01017ProteinID:CDY01017.1GO:GO:0003674GO:GO:0003824GO:GO:0004722GO:GO:0005488
GO:GO:0006464GO:GO:0006470GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787
GO:GO:0019538GO:GO:0043169EnsemblPlantsGene:GSBRNA2T00111040001InterPro:IPR001932InterPro:IPR036457PFAM:PF00481
InterPro:PP2CInterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746
PANTHER:PTHR13832PANTHER:PTHR13832:SF518SMART:SM00331SMART:SM00332SUPFAM:SSF81606UniParc:UPI0004EF0F58
SEG:seg:::::
Description
BnaC05g41830D
Coordinates
chrLK031923:-:669049..670741
Molecular Weight (calculated)
42732.4 Da
IEP (calculated)
6.757
GRAVY (calculated)
-0.401
Length
393 amino acids
Sequence
(BLAST)
001: MAGICCGVVG ESEPAVTVDS STRASLRRRL DLLPSIKIVA PPLESSRKRQ KRETPSGNQD LESNVRSERN VEKKARSSPV KNSNLIPSSA TEAESCFVSD
101: APKIGTTSVC GRRRDMEDAV SVHHSLIHKN SENLHFYGVF DGHGCSHVAE KCRERLHEIV KRDVEAMAAG GEDEWKETMA KSFQKMDREV CQRDSNNGAA
201: SRSVKSSCRC ELQSPQCDAV GSTAVVSVVT PEKIVVSNCG DSRAVLCRNG VAIPLSSDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV AVTDRTDDDE CLILASDGLW DVVTNETACG VARMCLQDSD TAHNACSDAA LLLTKLALAR QSSDNVSVVV VDLRKRRSNN QVS
Best Arabidopsis Sequence Match ( AT3G11410.1 )
(BLAST)
001: MAGICCGVVG ETEPAAPVDS TSRASLRRRL DLLPSIKIVA DSAVAPPLEN CRKRQKRETV VLSTLPGNLD LDSNVRSENK KARSAVTNSN SVTEAESFFS
101: DVPKIGTTSV CGRRRDMEDA VSIHPSFLQR NSENHHFYGV FDGHGCSHVA EKCRERLHDI VKKEVEVMAS DEWTETMVKS FQKMDKEVSQ RECNLVVNGA
201: TRSMKNSCRC ELQSPQCDAV GSTAVVSVVT PEKIIVSNCG DSRAVLCRNG VAIPLSVDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDEDE CLILASDGLW DVVPNETACG VARMCLRGAG AGDDSDAAHN ACSDAALLLT KLALARQSSD NVSVVVVDLR KRRNNQASS
Arabidopsis Description
PP2CAProtein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.