CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX96432
CDY01017
CDY08530
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45860.1	CDX72943	AT1G72770.1	19407142
AT5G45860.1	CDX96432	AT1G72770.1	19407142
AT5G45870.1	CDX72943	AT1G72770.1	19407142
AT5G45870.1	CDX96432	AT1G72770.1	19407142
AT5G45870.1	CDY01017	AT3G11410.1	19407142
AT5G45870.1	CDY08530	AT3G11410.1	19407142
AT5G45870.1	CDY67227	AT3G11410.1	19407142
AT5G45870.1	CDY67257	AT3G11410.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68675	Canola	cytosol	99.38	99.38
Bra025048.1-P	Field mustard	cytosol	96.91	92.35
AT5G45860.1	Thale cress	cytosol	83.33	83.85
AT5G45870.1	Thale cress	cytosol	79.01	80.5
CDX99450	Canola	cytosol	62.35	60.84
CDX78879	Canola	cytosol	62.35	60.84
CDY58019	Canola	cytosol	62.35	60.84
KRH11022	Soybean	cytosol	60.49	52.97
KRH21267	Soybean	cytosol	59.26	51.89
GSMUA_Achr4P10630_001	Banana	mitochondrion	50.62	50.93
CDX93191	Canola	cytosol	55.56	44.34
CDY52923	Canola	cytosol	55.56	43.9
CDX91449	Canola	plastid	55.56	43.48
CDY54453	Canola	plastid	55.56	43.27
CDY04951	Canola	cytosol	52.47	43.15
CDY54415	Canola	cytosol	54.32	43.14
CDY18391	Canola	plastid	54.32	43.14
CDY07739	Canola	plastid	54.32	42.51
CDY14471	Canola	plastid	54.32	42.51
CDY70860	Canola	cytosol	48.77	42.47
CDX74796	Canola	cytosol, nucleus, plastid	54.94	41.98
CDY24911	Canola	cytosol, mitochondrion	54.94	41.78
CDY07608	Canola	cytosol, mitochondrion	54.32	41.51
CDX80959	Canola	cytosol	51.85	41.38
CDY72318	Canola	cytosol	51.85	41.38
CDY01498	Canola	cytosol	48.77	41.36
CDY69797	Canola	cytosol	48.77	41.36
CDX90440	Canola	cytosol	48.77	41.36
CDX90028	Canola	cytosol	46.91	40.43
CDX98844	Canola	cytosol	50.62	40.2
CDX70150	Canola	cytosol	50.62	40.2
CDY15183	Canola	cytosol	46.3	40.11
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	52.47	40.09
CDX89219	Canola	cytosol	45.68	40.0
CDY04688	Canola	cytosol	45.68	39.78
CDY70517	Canola	cytosol	45.06	39.46
PGSC0003DMT400026521	Potato	cytosol	46.3	39.27
CDY49462	Canola	cytosol	44.44	39.13
CDY25052	Canola	cytosol	45.06	39.04
CDY11503	Canola	cytosol	45.06	38.83
CDX76731	Canola	cytosol	45.06	38.83
CDY61488	Canola	cytosol	43.83	38.59
CDY53905	Canola	cytosol	44.44	38.5
GSMUA_Achr4P15170_001	Banana	cytosol	59.26	38.4
CDX96197	Canola	cytosol	44.44	38.3
CDY58505	Canola	nucleus	49.38	38.1
CDX74368	Canola	cytosol	45.06	37.82
CDY27022	Canola	cytosol	43.83	37.77
CDY64350	Canola	cytosol	42.59	37.7
CDY38728	Canola	cytosol	42.59	37.5
CDX76554	Canola	cytosol	35.8	37.42
CDY08877	Canola	cytosol	35.8	37.42
CDX91871	Canola	cytosol	44.44	37.31
CDX77691	Canola	nucleus	49.38	37.21
CDY68316	Canola	nucleus	41.98	35.6
CDY03194	Canola	nucleus	41.36	35.08
Solyc02g076770.1.1	Tomato	cytosol	45.68	33.95
CDY48030	Canola	plastid	40.12	31.71
CDY22516	Canola	plastid	40.12	31.71
CDY07165	Canola	cytosol	11.73	31.67
CDX82120	Canola	plastid	39.51	31.22

Protein Annotations

EnsemblPlants:CDY58053	EnsemblPlantsGene:GSBRNA2T00023039001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF8	PFAM:PF10604	ProteinID:CDY58053	ProteinID:CDY58053.1	SEG:seg
SUPFAM:SSF55961	UniParc:UPI0004EDEFFA	UniProt:A0A078IZQ9	MapMan:11.1.2.1.1.1	:	:

Description

BnaA06g40220DBnaA06g40220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZQ9]

Coordinates

chrLK033631:-:14176..14664

Molecular Weight (calculated)

17823.1 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.304

Length

162 amino acids

Sequence
(BLAST)

001: MKTSQQQHRC GSTLVQTINA PLPLVWSILR RFDYPQAYKQ FVKTCDLSSG DGGEGSVRDV TVVSGLPAGY SIERLDELDD ESHVMAISII GGDHRLLNYR
101: SKTTAFVAAE EEEKTVVVES YMVDVPKGNS VEETTSFADT IVGFNLKSLA KLSENMASKR KS

Best Arabidopsis Sequence Match ( AT5G45860.1 )
(BLAST)

001: METSQKYHTC GSTLVQTIDA PLSLVWSILR RFDNPQAYKQ FVKTCNLSSG DGGEGSVREV TVVSGLPAEF SRERLDELDD ESHVMMISII GGDHRLVNYR
101: SKTMAFVAAD TEEKTVVVES YVVDVPEGNS EEETTSFADT IVGFNLKSLA KLSERVAHLK L

Arabidopsis Description

PYL11Abscisic acid receptor PYL11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.