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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 5
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX76528
CDX78840
CDX80307
CDX89368
CDX90405
CDX92752
CDX94382
CDX96432
CDX99476
CDY01017
CDY01532
CDY08530
CDY14318
CDY33008
CDY34065
CDY42756
CDY50002
CDY50003
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38310.1 CDX72943 AT1G72770.1 19407142
AT2G38310.1 CDX96432 AT1G72770.1 19407142
AT2G38310.1 CDX72943 AT1G72770.1 19624469
AT2G38310.1 CDX96432 AT1G72770.1 19624469
AT2G38310.1 CDY01017 AT3G11410.1 19407142
AT2G38310.1 CDY08530 AT3G11410.1 19407142
AT2G38310.1 CDY67227 AT3G11410.1 19407142
AT2G38310.1 CDY67257 AT3G11410.1 19407142
AT2G38310.1 CDX76528 AT4G18340.1 19407142
AT2G38310.1 CDX78840 AT4G18340.1 19407142
AT2G38310.1 CDX90405 AT4G18340.1 19407142
AT2G38310.1 CDX99476 AT4G18340.1 19407142
AT2G38310.1 CDY01532 AT4G18340.1 19407142
AT2G38310.1 CDY34065 AT4G18340.1 19407142
AT2G38310.1 CDX89368 AT4G26080.1 19407142
AT2G38310.1 CDX92752 AT4G26080.1 19407142
AT2G38310.1 CDX94382 AT4G26080.1 19407142
AT2G38310.1 CDY14318 AT4G26080.1 19407142
AT2G38310.1 CDY42756 AT4G26080.1 19407142
AT2G38310.1 CDY50002 AT4G26080.1 19407142
AT2G38310.1 CDY50003 AT4G26080.1 19407142
AT2G38310.1 CDX80307 AT5G59220.1 19407142
AT2G38310.1 CDY33008 AT5G59220.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000052.1-P Field mustard plastid 99.03 99.03
CDY07739 Canola plastid 99.03 99.03
CDY54453 Canola plastid 92.75 92.31
AT2G38310.1 Thale cress plastid 92.27 92.27
CDX91449 Canola plastid 92.27 92.27
CDY18391 Canola plastid 90.82 92.16
CDY54415 Canola cytosol 90.34 91.67
KRH00319 Soybean cytosol 59.42 69.49
KRH49452 Soybean plastid 58.45 67.98
TraesCS4A01G114400.1 Wheat cytosol 54.11 62.57
Solyc09g015380.1.1 Tomato plastid 60.39 62.19
Solyc10g085310.1.1 Tomato plastid 62.32 60.56
PGSC0003DMT400028658 Potato nucleus 61.84 60.09
VIT_13s0067g01940.t01 Wine grape plastid 61.35 59.91
Solyc10g076410.1.1 Tomato plastid 57.97 59.11
PGSC0003DMT400041080 Potato mitochondrion 58.94 58.94
PGSC0003DMT400075056 Potato plastid 60.87 58.88
KRH76014 Soybean cytosol 60.39 57.87
TraesCS1B01G306800.1 Wheat mitochondrion 54.11 57.73
VIT_08s0058g00470.t01 Wine grape plastid 62.8 57.27
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 55.56 57.21
Zm00001d038436_P001 Maize plastid 55.07 57.0
TraesCS1A01G297600.1 Wheat mitochondrion 55.07 56.72
GSMUA_Achr9P04600_001 Banana cytosol 39.13 56.64
CDX98844 Canola cytosol 55.56 56.37
CDY04951 Canola cytosol 53.62 56.35
CDX70150 Canola cytosol 55.07 55.88
HORVU1Hr1G070420.1 Barley mitochondrion 54.11 55.72
CDX93191 Canola cytosol 54.59 55.66
CDY52923 Canola cytosol 55.07 55.61
GSMUA_Achr6P32790_001 Banana cytosol 56.52 55.45
CDX74796 Canola cytosol, nucleus, plastid 56.52 55.19
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 55.07 55.07
TraesCS3D01G342000.1 Wheat plastid 54.59 54.85
HORVU3Hr1G088100.1 Barley plastid 54.59 54.85
HORVU3Hr1G039010.1 Barley plastid 54.59 54.85
TraesCS3A01G348400.1 Wheat plastid 54.59 54.85
CDY72318 Canola cytosol 53.62 54.68
CDY58053 Canola cytosol 42.51 54.32
CDY68675 Canola cytosol 42.51 54.32
CDX80959 Canola cytosol 53.14 54.19
Os05t0473000-01 Rice cytosol 56.04 53.46
TraesCS2D01G087500.1 Wheat plastid 54.59 52.8
EES19683 Sorghum plastid 55.07 52.78
EER92405 Sorghum plastid 56.52 52.7
TraesCS2B01G105300.1 Wheat plastid 55.07 52.53
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 53.62 52.36
Zm00001d047705_P001 Maize plastid 55.07 52.29
CDY24911 Canola cytosol, mitochondrion 53.62 52.11
CDY07608 Canola cytosol, mitochondrion 53.14 51.89
TraesCS4D01G191200.1 Wheat cytosol 56.04 51.79
TraesCS4B01G189800.1 Wheat cytosol 56.04 51.79
HORVU4Hr1G055220.1 Barley cytosol 55.56 51.34
CDX99450 Canola cytosol 41.06 51.2
CDX78879 Canola cytosol 41.06 51.2
CDY58019 Canola cytosol 41.06 51.2
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 54.11 50.91
GSMUA_AchrUn_... Banana plastid 38.65 50.63
GSMUA_Achr9P17980_001 Banana cytosol 36.23 50.34
Os03t0297600-01 Rice cytosol 55.56 50.22
CDY70860 Canola cytosol 43.96 48.92
Zm00001d043014_P001 Maize cytosol 50.24 48.83
GSMUA_Achr5P29490_001 Banana plastid 38.16 48.77
CDX90440 Canola cytosol 44.93 48.69
CDY01498 Canola cytosol 44.93 48.69
GSMUA_Achr11P... Banana cytosol, plastid 36.23 47.47
CDX76731 Canola cytosol 43.0 47.34
CDY11503 Canola cytosol 43.0 47.34
CDY69797 Canola cytosol 43.48 47.12
GSMUA_Achr8P21220_001 Banana cytosol 38.65 47.06
CDX90028 Canola cytosol 42.51 46.81
CDY04688 Canola cytosol 42.03 46.77
CDY61488 Canola cytosol 41.55 46.74
CDY49462 Canola cytosol 41.55 46.74
CDY15183 Canola cytosol 42.03 46.52
CDX89219 Canola cytosol 41.55 46.49
CDX96197 Canola cytosol 42.03 46.28
CDY64350 Canola cytosol 40.58 45.9
CDY38728 Canola cytosol 40.58 45.65
CDY70517 Canola cytosol 40.58 45.41
CDY27022 Canola cytosol 41.06 45.21
CDY25052 Canola cytosol 40.58 44.92
CDY53905 Canola cytosol 39.61 43.85
CDX74368 Canola cytosol 40.58 43.52
GSMUA_Achr10P... Banana cytosol, plastid 41.55 43.43
Os01t0827800-00 Rice plastid 53.62 43.36
CDY58505 Canola nucleus 43.96 43.33
CDX76554 Canola cytosol 31.88 42.58
CDX91871 Canola cytosol 39.61 42.49
CDX77691 Canola nucleus 43.96 42.33
CDY08877 Canola cytosol 31.4 41.94
CDX82120 Canola plastid 40.1 40.49
CDY48030 Canola plastid 39.61 40.0
CDY22516 Canola plastid 39.61 40.0
CDY07165 Canola cytosol 11.59 40.0
TraesCS2A01G089400.1 Wheat plastid 54.59 39.51
CDY03194 Canola nucleus 36.23 39.27
CDY68316 Canola nucleus 36.23 39.27
OQU87775 Sorghum endoplasmic reticulum, extracellular 48.31 36.76
Zm00001d012475_P001 Maize cytosol 50.24 33.33
Protein Annotations
EnsemblPlants:CDY14471EnsemblPlantsGene:GSBRNA2T00079151001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF48PFAM:PF10604ProteinID:CDY14471ProteinID:CDY14471.1SUPFAM:SSF55961
UniParc:UPI0004EBC330UniProt:A0A078FN24MapMan:11.1.2.1.1.1:::
Description
BnaC03g21240DBnaC03g21240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FN24]
Coordinates
chrLK032043:-:519521..520384
Molecular Weight (calculated)
22287.5 Da
IEP (calculated)
6.933
GRAVY (calculated)
-0.033
Length
207 amino acids
Sequence
(BLAST)
001: MLAVHRPSSA VTDGDSVQVP MMIASFQKRF PSLSRDTTAA SFHTHEVGPN QCCSAVIQEI SAPISAVWSV VRRFDNPQAY KHFLKSCNVI GGDGGNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHS SPICGTVVVE SYVVDVPLGN TKEETCDFVD VIVRCNLQSL AKIAESSAVE
201: GKKKTSM
Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)
001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL
Arabidopsis Description
PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.