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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 8
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX76554
CDX90440
CDY01498
CDY07739
CDY08877
CDY14471
CDY69797
CDY70860

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18340.1 CDY07739 AT2G38310.1 19407142
AT4G18340.1 CDY14471 AT2G38310.1 19407142
AT4G18340.1 CDX76554 AT4G17870.1 19407142
AT4G18340.1 CDX90440 AT4G17870.1 19407142
AT4G18340.1 CDY01498 AT4G17870.1 19407142
AT4G18340.1 CDY08877 AT4G17870.1 19407142
AT4G18340.1 CDY69797 AT4G17870.1 19407142
AT4G18340.1 CDY70860 AT4G17870.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78840 Canola vacuole 99.5 99.5
Bra013297.1-P Field mustard vacuole 99.25 99.25
CDY01532 Canola vacuole 93.52 94.46
CDX90405 Canola vacuole 93.52 94.46
AT4G18340.1 Thale cress vacuole 91.02 91.94
CDX76528 Canola extracellular, vacuole 87.78 88.89
CDY34065 Canola extracellular, vacuole 87.53 86.88
CDX99881 Canola extracellular, vacuole 59.1 62.7
CDX90225 Canola vacuole 62.34 61.73
CDY26296 Canola extracellular, plasma membrane, vacuole 60.85 61.15
KRG89350 Soybean extracellular, vacuole 58.6 58.75
Solyc02g070450.1.1 Tomato endoplasmic reticulum, extracellular, vacuole 58.35 58.65
KRH11184 Soybean endoplasmic reticulum, extracellular, vacuole 57.86 58.29
KRH21069 Soybean vacuole 57.86 58.15
CDY63842 Canola golgi, vacuole 40.9 56.94
KRH50394 Soybean extracellular, vacuole 59.85 55.17
TraesCS7A01G349200.1 Wheat endoplasmic reticulum, extracellular 51.62 51.11
EER88444 Sorghum extracellular, vacuole 51.87 50.98
TraesCS7B01G233500.1 Wheat extracellular 51.12 50.62
TraesCS7D01G329400.1 Wheat endoplasmic reticulum, extracellular 51.12 50.62
Zm00001d046134_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 51.12 50.37
CDY04498 Canola extracellular, vacuole 43.89 45.6
HORVU7Hr1G079650.7 Barley extracellular, vacuole 49.88 45.56
CDX83270 Canola extracellular, vacuole 43.39 44.62
CDY31181 Canola extracellular, vacuole 43.14 44.36
Os06t0531000-00 Rice vacuole 52.37 42.34
CDX93815 Canola extracellular 42.14 40.82
CDY69080 Canola extracellular 42.39 40.67
CDY20153 Canola plasma membrane 38.9 39.9
CDY21869 Canola plasma membrane 38.9 39.9
CDX71449 Canola plasma membrane, vacuole 43.89 38.77
CDY13362 Canola extracellular, vacuole 39.9 38.65
CDX83243 Canola vacuole 36.16 38.36
CDX67530 Canola extracellular 40.4 37.94
CDY38531 Canola golgi, vacuole 35.91 37.7
CDY56498 Canola extracellular, vacuole 38.65 35.07
CDX92794 Canola endoplasmic reticulum, extracellular 39.15 34.81
CDY18049 Canola extracellular, vacuole 38.15 34.62
CDY06601 Canola endoplasmic reticulum, extracellular 37.91 33.85
CDY20780 Canola extracellular, vacuole 37.91 33.85
CDY46679 Canola extracellular, vacuole 37.41 33.63
CDY17308 Canola extracellular, vacuole 37.66 33.63
CDY36734 Canola extracellular, vacuole 38.4 33.48
CDY12009 Canola extracellular, vacuole 38.4 33.48
CDY30112 Canola cytosol 35.16 33.33
CDY19908 Canola extracellular, vacuole 37.66 32.9
CDY22386 Canola extracellular, vacuole 32.92 30.56
CDX71547 Canola extracellular, vacuole 32.92 30.28
CDY19838 Canola extracellular, vacuole 34.66 29.76
CDX87130 Canola vacuole 34.41 29.68
CDY62387 Canola extracellular 32.92 29.4
CDY53692 Canola extracellular 32.92 29.4
CDY24629 Canola vacuole 33.67 29.35
CDY20461 Canola extracellular 32.92 29.33
CDX76097 Canola extracellular 32.92 29.27
CDY28063 Canola vacuole 33.42 29.13
CDY08004 Canola vacuole 33.42 29.13
CDX69064 Canola extracellular, plasma membrane, vacuole 36.66 29.11
CDY02936 Canola extracellular 32.67 28.98
CDX75437 Canola extracellular, plasma membrane, vacuole 36.41 28.85
CDY64970 Canola extracellular, plasma membrane, vacuole 36.16 28.83
CDY32869 Canola endoplasmic reticulum, extracellular, plasma membrane 36.16 28.83
CDY40219 Canola extracellular 32.17 28.67
CDY53600 Canola extracellular 32.17 28.67
CDY41234 Canola extracellular 32.42 28.57
CDY45466 Canola vacuole 32.67 28.48
CDY41232 Canola extracellular 31.92 28.38
CDY14214 Canola endoplasmic reticulum, extracellular, vacuole 36.16 28.27
CDY40218 Canola extracellular 31.92 28.26
CDY59775 Canola extracellular, vacuole 33.17 28.06
CDY37244 Canola vacuole 35.66 27.93
CDY26761 Canola vacuole 35.66 27.93
CDY50110 Canola extracellular, vacuole 32.92 27.73
CDY18092 Canola extracellular, vacuole 32.92 27.73
CDY63754 Canola extracellular, vacuole 32.67 27.41
CDY53213 Canola extracellular, vacuole 32.67 27.29
CDY12732 Canola extracellular, vacuole 32.67 27.29
CDY01191 Canola extracellular, vacuole 32.67 27.29
CDY48807 Canola extracellular 33.67 27.16
CDY09427 Canola extracellular 33.67 27.16
CDY06469 Canola extracellular 32.17 26.93
CDY08310 Canola extracellular, vacuole 32.17 26.93
CDY62033 Canola extracellular, plasma membrane, vacuole 35.66 26.83
CDY16440 Canola extracellular 33.17 26.39
CDX97707 Canola plastid 35.91 26.23
CDY12371 Canola extracellular, vacuole 31.17 26.1
CDY58676 Canola extracellular, vacuole 32.67 25.99
CDY27122 Canola extracellular, vacuole 30.92 25.89
CDY06818 Canola extracellular, plasma membrane, vacuole 32.17 25.7
CDY59252 Canola extracellular, plasma membrane, vacuole 23.94 23.53
CDY67322 Canola extracellular 12.97 23.53
CDY23618 Canola endoplasmic reticulum, plasma membrane, vacuole 24.69 23.52
CDY68826 Canola cytosol, endoplasmic reticulum, peroxisome 24.69 23.35
CDX74052 Canola vacuole 32.67 23.1
CDY21013 Canola extracellular 28.93 22.35
CDY31214 Canola vacuole 28.43 21.84
Protein Annotations
KEGG:00500+3.2.1.39Gene3D:3.20.20.80MapMan:50.3.2GO:A0A078EEC8EnsemblPlants:CDX99476ProteinID:CDX99476
ProteinID:CDX99476.1GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00107829001InterPro:Glyco_hydro_17InterPro:Glycoside_hydrolase_SFPFAM:PF00332
PANTHER:PTHR32227PANTHER:PTHR32227:SF229SUPFAM:SSF51445SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EF2231
SEG:seg:::::
Description
BnaC01g10760D
Coordinates
chrLK031910:+:1059093..1060924
Molecular Weight (calculated)
44465.4 Da
IEP (calculated)
7.564
GRAVY (calculated)
-0.030
Length
401 amino acids
Sequence
(BLAST)
001: MTSRTFTRLP NLINVLLLLS LVFSGNILQS VTSLGINYGQ VGNNLPSPDK VINLLRSLRI TKTRIYDTNP QILSAFANSN IEIIVTIENQ VLTLLQDPQQ
101: ALQWVDSHIK PYIPATRITG IMVGNELFTD EDSSLIGYMM PAMINIHKAL VQLGLDRYVQ VSSPSSLAVL AESYPPSAGS FKPEVSSVMQ QLLQFLEATR
201: SPFWINAYPY FAYKDNPDKI PIDYVLFNRN VGMTDPNTRL HYDNMMYAQV DALAFAAAKL GYRNIEVRVA ETGWPSKGDA GEVGASPANA ATYNRNLMMR
301: QFAGEGTPAR RNSRLDVYIF ALFNEDMKPG PTSEKNYGIF RPDGSLAYNL GFSTMSTTTA NSESVTYSSS ATKAVNRATT TLECWTILIL AMIQVVISRL
401: F
Best Arabidopsis Sequence Match ( AT4G18340.1 )
(BLAST)
001: MTSRTFTRHS SLIHVFLLLS LVFSGNILQT VTSLGINYGQ VGNNLPSPDK VINLLRSLRI TKTRIYDTNP QILSAFANSN IEIIVTIENQ VLPLLQDPQQ
101: ATQWVDSHIK PYVPATRITG IMVGNELFTD DDSSLIGYMM PAIINIHKAL VQLGLDRYIQ VSSPSSLAVL GESYPPSAGS FKPEVSSVMQ QLLDFLEATK
201: SPFWINAYPY FAYKDNPQEI PVDYVLFNRN IGMTDPNTRL HYDNMMYAQV DAVAFAAAKL GYRNIEVRVA ETGWPSKGDV GEIGASPVNA ATYNRNLMMR
301: QFAGEGTPAR RNARLDVYIF ALFNEDMKPG PTSEKNYGIF QPDGSLAYNL GFSTMSTTTA NSESVTYSSS ATKAKRSLEY WTILILAMVQ VVMLRLF
Arabidopsis Description
Beta-1,3-glucanase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L837]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.