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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, vacuole

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, vacuole
Any Predictor:secretory
iPSORT:secretory
MultiLoc:vacuole
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G050110.1
HORVU1Hr1G070420.1
HORVU3Hr1G039010.1
HORVU3Hr1G088100.1
HORVU4Hr1G055220.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18340.1 HORVU1Hr1G070420.1 AT2G38310.1 19407142
AT4G18340.1 HORVU3Hr1G039010.1 AT2G38310.1 19407142
AT4G18340.1 HORVU3Hr1G088100.1 AT2G38310.1 19407142
AT4G18340.1 HORVU4Hr1G055220.1 AT2G38310.1 19407142
AT4G18340.1 HORVU1Hr1G050110.1 AT4G17870.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G329400.1 Wheat endoplasmic reticulum, extracellular 84.51 91.6
TraesCS7B01G233500.1 Wheat extracellular 84.05 91.11
TraesCS7A01G349200.1 Wheat endoplasmic reticulum, extracellular 82.92 89.88
EER88444 Sorghum extracellular, vacuole 66.29 71.32
Zm00001d046134_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 65.83 71.01
VIT_10s0003g03690.t01 Wine grape extracellular 51.03 59.73
Os06t0531000-00 Rice vacuole 67.43 59.68
Bra032357.1-P Field mustard extracellular, vacuole 47.61 55.29
CDX99881 Canola extracellular, vacuole 47.61 55.29
KRH11184 Soybean endoplasmic reticulum, extracellular, vacuole 49.2 54.27
KRH21069 Soybean vacuole 48.97 53.88
Bra010800.1-P Field mustard vacuole 46.7 53.66
KRG89350 Soybean extracellular, vacuole 48.06 52.75
CDY26296 Canola extracellular, plasma membrane, vacuole 47.61 52.38
AT1G30080.1 Thale cress vacuole 48.29 51.96
Solyc02g070450.1.1 Tomato endoplasmic reticulum, extracellular, vacuole 46.92 51.63
CDY63842 Canola golgi, vacuole 33.49 51.04
CDX90225 Canola vacuole 46.92 50.86
KRH50394 Soybean extracellular, vacuole 49.66 50.11
CDX99476 Canola vacuole 45.56 49.88
CDX78840 Canola vacuole 45.56 49.88
Bra013297.1-P Field mustard vacuole 45.56 49.88
CDX76528 Canola extracellular, vacuole 44.87 49.75
AT4G18340.1 Thale cress vacuole 44.87 49.62
Bra012604.1-P Field mustard vacuole 44.42 49.12
CDX90405 Canola vacuole 44.42 49.12
CDY01532 Canola vacuole 44.19 48.87
CDY34065 Canola extracellular, vacuole 44.87 48.76
HORVU3Hr1G084170.1 Barley extracellular, vacuole 42.14 45.01
HORVU3Hr1G067280.5 Barley plasma membrane 41.23 42.49
HORVU1Hr1G010910.2 Barley extracellular, vacuole 37.81 40.29
HORVU1Hr1G073820.3 Barley mitochondrion, peroxisome, plastid, vacuole 41.0 39.56
HORVU1Hr1G011210.1 Barley vacuole 37.13 37.91
HORVU4Hr1G008950.1 Barley vacuole 35.76 37.65
HORVU0Hr1G021950.4 Barley golgi, vacuole 33.03 36.25
HORVU7Hr1G012550.1 Barley vacuole 36.9 36.24
HORVU4Hr1G063240.7 Barley golgi, vacuole 35.54 36.03
HORVU4Hr1G065340.1 Barley extracellular, vacuole 33.94 34.57
HORVU2Hr1G072890.1 Barley mitochondrion 41.23 33.9
HORVU6Hr1G032490.1 Barley plastid 33.94 33.41
HORVU6Hr1G079630.2 Barley mitochondrion, plastid, vacuole 39.41 31.98
HORVU3Hr1G070400.1 Barley extracellular, vacuole 32.8 31.44
HORVU5Hr1G075510.2 Barley plasma membrane, vacuole 34.62 31.15
HORVU2Hr1G102010.1 Barley golgi, mitochondrion, vacuole 24.37 30.4
HORVU4Hr1G003090.3 Barley extracellular, vacuole 36.45 29.85
HORVU5Hr1G083710.1 Barley golgi, mitochondrion, vacuole 33.71 29.42
HORVU5Hr1G084900.2 Barley endoplasmic reticulum, extracellular, vacuole 32.12 29.31
HORVU3Hr1G070440.12 Barley plastid 33.49 28.27
HORVU4Hr1G027740.1 Barley vacuole 31.21 27.45
HORVU2Hr1G036980.5 Barley plasma membrane 29.84 26.63
HORVU2Hr1G044450.4 Barley extracellular, vacuole 33.26 26.02
HORVU4Hr1G067180.3 Barley extracellular, vacuole 29.84 25.99
HORVU5Hr1G095380.1 Barley cytosol 18.45 25.8
HORVU7Hr1G091100.3 Barley vacuole 33.26 25.7
HORVU2Hr1G044460.2 Barley vacuole 31.66 25.09
HORVU5Hr1G048630.2 Barley plasma membrane, vacuole 27.79 24.6
HORVU1Hr1G092240.3 Barley extracellular, vacuole 31.66 23.68
HORVU1Hr1G092310.2 Barley extracellular 29.84 23.19
HORVU2Hr1G047410.3 Barley vacuole 13.67 9.95
Protein Annotations
EnsemblPlants:HORVU7Hr1G079650.7EnsemblPlantsGene:HORVU7Hr1G079650Gene3D:3.20.20.80GO:GO:0003674GO:GO:0003824GO:GO:0004553
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016787GO:GO:0016798InterPro:Glyco_hydro_17
InterPro:Glycoside_hydrolase_SFKEGG:00500+3.2.1.39PANTHER:PTHR32227PANTHER:PTHR32227:SF85PFAM:PF00332ScanProsite:PS00587
SEG:segSUPFAM:SSF51445UniParc:UPI000B4894CAUniProt:A0A287X166MapMan:50.3.2:
Description
No Description!
Coordinates
chrchr7H:-:470188909..470192523
Molecular Weight (calculated)
46457.6 Da
IEP (calculated)
6.301
GRAVY (calculated)
0.175
Length
439 amino acids
Sequence
(BLAST)
001: PRLHSLLAPA IGSIDAAMAT FATPVRSASL QLPALLCILL CSEVWVLQCG AAIGINYGQV GNNLPTPAQV VSLLSSLRVG KVRIYDVNPQ VLAAFGGTGI
101: ELIVTVPNDL VQPMAASAVQ AMQWVTANIK PYFPATRVTG VAVGNEVFTD DDAALKASLV PAMRNLHAAL AQLGMDGYVH VSTASSLGVL ANSYPPSQGA
201: FTPECAALML PFLRFLADTN APFWINAYPY FAYKADPANV SLSYALSDPY HVGAVDPYTH LQYTSMLYAQ VDAVSFAAAR LGYGGIPVFV SETGWPSKGD
301: ADEVGATVEN ARAYNRNLLV RQVSNEGTPL RPRQRIEVYL FALFNEDMKP GPTSERNYGL YQPDGRMVYN VGLAQQQTTS AASLSLAASS APPTTGCWEG
401: HDQAVPPLSA GHPAHLPGFL TGIAKAAGSA AICMQAKWP
Best Arabidopsis Sequence Match ( AT1G30080.1 )
(BLAST)
001: MSNMFSRIAM TNSIVLLLFS LTFLEHGLLF QRVSSLGINY GQVGDNLPPP DKVLQLLSSL HINKTRIYDT NPRVLTSFAN SNIELFVTVE NEMLPSLVDP
101: QQALQWVTTR IKPYFPATKI GGIAVGNELY TDDDSSLIGY LMPAMMSIHG ALVQTGLDKY IQVSTPNSLS VLQESYPPSA GCFRPEVAGV MTQLLGFLRN
201: TNSPFWINAY PYFAYKDSPT KIPLDYVLFN PNPGMVDPYT KYRYDNMLYA QVDAVIFAMA RLGFKDIEVG VSETGWPSKG DGDEVGATVA NAAVYNKNIL
301: RRQLQNEGTP LRPNLSFDVY LFALFNEDLK PGPTSERNYG LYQPDETMTY NVGLLSSSSL TSTSTTSSTS IISLTSSAST ALKKGKQRLM YWTCVYLLAI
401: HMLIRRSY
Arabidopsis Description
Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I4R0]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.