Factsheet for Bra012604.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000052.1-P
Bra012635.1-P
Bra013262.1-P
Bra021032.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18340.1	Bra000052.1-P	AT2G38310.1	19407142
AT4G18340.1	Bra012635.1-P	AT4G17870.1	19407142
AT4G18340.1	Bra013262.1-P	AT4G17870.1	19407142
AT4G18340.1	Bra021032.1-P	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90405	Canola	vacuole	99.75	99.75
CDY01532	Canola	vacuole	98.99	98.99
Bra013297.1-P	Field mustard	vacuole	93.7	92.77
AT4G18340.1	Thale cress	vacuole	90.93	90.93
Bra010800.1-P	Field mustard	vacuole	60.2	62.57
Bra032357.1-P	Field mustard	extracellular, vacuole	59.19	62.17
KRH11184	Soybean	endoplasmic reticulum, extracellular, vacuole	59.7	59.55
Solyc02g070450.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	59.45	59.15
KRH21069	Soybean	vacuole	59.45	59.15
KRG89350	Soybean	extracellular, vacuole	58.69	58.25
KRH50394	Soybean	extracellular, vacuole	59.95	54.71
EER88444	Sorghum	extracellular, vacuole	51.89	50.49
Zm00001d046134_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	51.13	49.88
TraesCS7A01G349200.1	Wheat	endoplasmic reticulum, extracellular	49.87	48.89
TraesCS7B01G233500.1	Wheat	extracellular	49.62	48.64
TraesCS7D01G329400.1	Wheat	endoplasmic reticulum, extracellular	49.62	48.64
HORVU7Hr1G079650.7	Barley	extracellular, vacuole	49.12	44.42
Bra000508.1-P	Field mustard	extracellular, vacuole	43.07	43.85
Os06t0531000-00	Rice	vacuole	52.14	41.73
Bra023293.1-P	Field mustard	extracellular	42.82	41.06
Bra012015.1-P	Field mustard	plasma membrane, vacuole	43.07	41.01
Bra021137.1-P	Field mustard	plasma membrane	39.55	40.67
Bra028526.1-P	Field mustard	extracellular, vacuole	40.55	37.44
Bra000536.1-P	Field mustard	golgi, plasma membrane, vacuole	35.01	36.77
Bra035561.1-P	Field mustard	extracellular, vacuole	38.04	32.83
Bra015166.1-P	Field mustard	extracellular, vacuole	38.79	32.56
Bra002927.1-P	Field mustard	extracellular, vacuole	37.78	32.4
Bra039852.1-P	Field mustard	vacuole	36.78	31.33
Bra036510.1-P	Field mustard	cytoskeleton, extracellular, plastid, vacuole	34.76	30.73
Bra033641.1-P	Field mustard	extracellular, vacuole	33.25	30.56
Bra019084.1-P	Field mustard	endoplasmic reticulum, extracellular	37.78	30.43
Bra003212.1-P	Field mustard	extracellular	32.75	28.95
Bra011537.1-P	Field mustard	extracellular, plasma membrane, vacuole	36.78	28.85
Bra005028.1-P	Field mustard	extracellular	32.49	28.79
Bra028343.1-P	Field mustard	extracellular, vacuole	34.26	28.57
Bra029639.1-P	Field mustard	vacuole	33.0	28.48
Bra002805.1-P	Field mustard	nucleus, plastid, vacuole	35.01	28.25
Bra014979.1-P	Field mustard	extracellular, vacuole	34.01	28.24
Bra037057.1-P	Field mustard	extracellular, vacuole	34.01	28.18
Bra014747.1-P	Field mustard	extracellular	31.99	28.16
Bra032758.1-P	Field mustard	vacuole	34.01	28.12
Bra007162.1-P	Field mustard	extracellular	31.74	28.0
Bra001918.1-P	Field mustard	extracellular, vacuole	33.75	27.92
Bra007161.1-P	Field mustard	extracellular	31.23	27.37
Bra026644.1-P	Field mustard	extracellular	34.26	27.36
Bra010330.1-P	Field mustard	cytosol	36.02	27.34
Bra027421.1-P	Field mustard	extracellular, plasma membrane, vacuole	34.26	27.15
Bra039757.1-P	Field mustard	extracellular, vacuole	33.75	26.53
Bra011100.1-P	Field mustard	extracellular, plasma membrane, vacuole	33.25	26.29
Bra017659.1-P	Field mustard	vacuole	36.52	26.17
Bra028988.1-P	Field mustard	extracellular, vacuole	37.53	25.91
Bra038969.1-P	Field mustard	extracellular, vacuole	31.99	25.15
Bra027207.1-P	Field mustard	plastid	32.75	24.62
Bra001245.1-P	Field mustard	vacuole	33.0	23.14
Bra016812.1-P	Field mustard	extracellular	29.22	22.35

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:3.20.20.80	MapMan:50.3.2	EnsemblPlantsGene:Bra012604	EnsemblPlants:Bra012604.1	EnsemblPlants:Bra012604.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	UniProt:M4D7Z4	PFAM:PF00332	PANTHER:PTHR32227
PANTHER:PTHR32227:SF229	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002540A80	SEG:seg

Description

AT4G18340 (E=8e-194) | glycosyl hydrolase family 17 protein

Coordinates

chrA03:-:23251870..23253847

Molecular Weight (calculated)

44123.1 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.055

Length

397 amino acids

Sequence
(BLAST)

001: MTSRTVARLP NLINVFLLLS LVLSGNILQK ATSLGINYGQ VGNNLPSPDK VINLLRSLRI TKTRIYDTNP QILTSFANSN IEIIVTIENQ VLTLLQDPQQ
101: ALQWVDSHIK PYIPATRITG IMVGNELFTD EDSSLIGYMM PAIINIHKAL VQLGLDRYIE VSSPSSLAVL AESYPPSAGS FKPEVSSVMQ QLLQFLEATR
201: SPFWINAYPY FAYKDNPNKI PIDYVLFNRN IGMTDPNTRL HYDNMMYAQV DAVAFAAAKL GYRNIEVRVA ETGWPSKGDA GEVGASPTNA ATYNRNLMMR
301: QFAGEGTPAR RNSRLDVYIF ALFNEDMKPG PTSEKNYGIF RPDGSLAYNL GFSTMSTTTA NSESVAYSSY ATKAKMTLEY WTILMLAMIQ VVVSRLS

Best Arabidopsis Sequence Match ( AT4G18340.1 )
(BLAST)

001: MTSRTFTRHS SLIHVFLLLS LVFSGNILQT VTSLGINYGQ VGNNLPSPDK VINLLRSLRI TKTRIYDTNP QILSAFANSN IEIIVTIENQ VLPLLQDPQQ
101: ATQWVDSHIK PYVPATRITG IMVGNELFTD DDSSLIGYMM PAIINIHKAL VQLGLDRYIQ VSSPSSLAVL GESYPPSAGS FKPEVSSVMQ QLLDFLEATK
201: SPFWINAYPY FAYKDNPQEI PVDYVLFNRN IGMTDPNTRL HYDNMMYAQV DAVAFAAAKL GYRNIEVRVA ETGWPSKGDV GEIGASPVNA ATYNRNLMMR
301: QFAGEGTPAR RNARLDVYIF ALFNEDMKPG PTSEKNYGIF QPDGSLAYNL GFSTMSTTTA NSESVTYSSS ATKAKRSLEY WTILILAMVQ VVMLRLF

Arabidopsis Description

Beta-1,3-glucanase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L837]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.