Factsheet for Bra021032.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002038.1-P
Bra002594.1-P
Bra002766.1-P
Bra010441.1-P
Bra012113.1-P
Bra012604.1-P
Bra012635.1-P
Bra013262.1-P
Bra013297.1-P
Bra013945.1-P
Bra016034.1-P
Bra019121.1-P
Bra021032.1-P
Bra034845.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	Bra016034.1-P	AT1G72770.1	19407142
AT4G17870.1	Bra016034.1-P	AT1G72770.1	19624469
AT4G17870.1	Bra016034.1-P	AT1G72770.1	21847091
AT4G17870.1	Bra002038.1-P	AT3G11410.1	19407142
AT4G17870.1	Bra034845.1-P	AT3G11410.1	19407142
AT4G17870.1	Bra012635.1-P	AT4G17870.1	21847091
AT4G17870.1	Bra013262.1-P	AT4G17870.1	21847091
AT4G17870.1	Bra021032.1-P	AT4G17870.1	21847091
AT4G17870.1	Bra012604.1-P	AT4G18340.1	19407142
AT4G17870.1	Bra013297.1-P	AT4G18340.1	19407142
AT4G17870.1	Bra010441.1-P	AT4G26080.1	19407142
AT4G17870.1	Bra013945.1-P	AT4G26080.1	19407142
AT4G17870.1	Bra019121.1-P	AT4G26080.1	19407142
AT4G17870.1	Bra010441.1-P	AT4G26080.1	19874541
AT4G17870.1	Bra013945.1-P	AT4G26080.1	19874541
AT4G17870.1	Bra019121.1-P	AT4G26080.1	19874541
AT4G17870.1	Bra002766.1-P	AT5G57050.1	19407142
AT4G17870.1	Bra002594.1-P	AT5G59220.1	19407142
AT4G17870.1	Bra012113.1-P	AT5G66880.1	19874541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76554	Canola	cytosol	98.09	99.35
CDY08877	Canola	cytosol	95.54	96.77
Bra013262.1-P	Field mustard	cytosol	91.72	75.39
Bra012635.1-P	Field mustard	cytosol	89.81	73.82
AT4G17870.1	Thale cress	cytosol	87.9	72.25
Bra024995.1-P	Field mustard	nucleus	71.97	53.81
Solyc06g061180.1.1	Tomato	nucleus	64.97	47.89
PGSC0003DMT400005378	Potato	nucleus	64.33	47.42
Bra017526.1-P	Field mustard	nucleus	54.78	46.99
GSMUA_Achr4P19170_001	Banana	cytosol	57.96	46.91
KRH45453	Soybean	cytosol	63.06	46.7
KRH75621	Soybean	cytosol	62.42	45.79
GSMUA_Achr8P14780_001	Banana	cytosol	57.32	43.69
Bra007772.1-P	Field mustard	cytosol	50.96	42.55
VIT_02s0012g01270.t01	Wine grape	cytosol	71.34	42.42
TraesCS1A01G191700.1	Wheat	cytosol	56.05	41.71
TraesCS1D01G195300.1	Wheat	cytosol	56.05	41.31
TraesCS1B01G206600.1	Wheat	cytosol, unclear	55.41	40.85
Zm00001d030045_P001	Maize	cytosol	54.78	40.57
Zm00001d047037_P001	Maize	cytosol	52.23	40.0
OQU92088	Sorghum	cytosol	53.5	39.62
Os10t0573400-01	Rice	plasma membrane	53.5	39.62
Bra028758.1-P	Field mustard	cytosol	39.49	37.58
Bra008064.1-P	Field mustard	plastid	46.5	35.61
Bra025048.1-P	Field mustard	cytosol	36.94	34.12
Bra003077.1-P	Field mustard	cytosol	39.49	33.7
Bra017125.1-P	Field mustard	plastid	43.31	33.33
Bra000052.1-P	Field mustard	plastid	42.68	32.37
Bra029093.1-P	Field mustard	cytosol	37.58	32.07
Bra013334.1-P	Field mustard	cytosol	33.76	31.93
HORVU1Hr1G050110.1	Barley	plastid	55.41	31.75
Bra003463.1-P	Field mustard	cytosol	36.94	31.02
Bra026299.1-P	Field mustard	cytosol	36.31	30.98
Bra022634.1-P	Field mustard	cytosol	36.94	30.85
Bra033267.1-P	Field mustard	cytosol	36.31	30.65
Bra005853.1-P	Field mustard	cytosol	38.22	29.56
Bra005115.1-P	Field mustard	plastid	28.03	29.53
Bra009113.1-P	Field mustard	cytosol	38.22	29.41
Bra000938.1-P	Field mustard	cytosol	35.67	29.02
Bra017012.1-P	Field mustard	cytosol	36.94	28.29
Bra000184.1-P	Field mustard	cytosol, mitochondrion	35.67	26.42
Bra004967.1-P	Field mustard	mitochondrion	35.03	25.94
VIT_04s0008g00270.t01	Wine grape	cytosol	35.03	18.97
VIT_08s0058g00230.t01	Wine grape	plastid	34.39	16.77
VIT_13s0175g00110.t01	Wine grape	plastid	7.01	10.38

Protein Annotations

EnsemblPlants:Bra021032.1	EnsemblPlants:Bra021032.1-P	EnsemblPlantsGene:Bra021032	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF10604	SUPFAM:SSF55961	UniParc:UPI00025470AB
UniProt:M4DWY6	MapMan:11.1.2.1.1.1	:	:	:	:

Description

AT4G17870 (E=2e-044) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46790.1); Has 177 Blast hits to 177 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA08:+:10348803..10349381

Molecular Weight (calculated)

17456.6 Da

IEP (calculated)

5.014

GRAVY (calculated)

-0.339

Length

157 amino acids

Sequence
(BLAST)

001: MPSELTQEER SALAQSIAEF HTYQLGPGSC SSLHAQRINA PPEIVWSVVR QFDKPQTYKH FIKSCSVEEG FEMRVGCTRD VIVISGLPAN TSTFEKERRV
101: WTVVLESYVV DMPEGNSEDD TRMFADTVVK LNLQKLATVT EAMARNAAGE RGGSQVT

Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)

001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T

Arabidopsis Description

PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.