Factsheet for VIT_13s0175g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01270.t01
VIT_04s0008g00270.t01
VIT_06s0004g05460.t01
VIT_07s0197g00080.t01
VIT_08s0058g00230.t01
VIT_09s0002g01850.t01
VIT_13s0019g02200.t01
VIT_13s0175g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	19624469
AT4G17870.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT4G17870.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT4G17870.1	VIT_02s0012g01270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_04s0008g00270.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_08s0058g00230.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_13s0175g00110.t01	AT4G17870.1	21847091
AT4G17870.1	VIT_06s0004g05460.t01	AT5G59220.1	19407142
AT4G17870.1	VIT_07s0197g00080.t01	AT5G66880.1	19874541
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	19407142
AT5G46790.1	VIT_09s0002g01850.t01	AT1G72770.1	21847091
AT5G46790.1	VIT_13s0019g02200.t01	AT3G11410.1	19407142
AT5G46790.1	VIT_02s0012g01270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_04s0008g00270.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_08s0058g00230.t01	AT5G46790.1	21847091
AT5G46790.1	VIT_13s0175g00110.t01	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00230.t01	Wine grape	plastid	78.3	25.78
VIT_04s0008g00270.t01	Wine grape	cytosol	25.47	9.31
PGSC0003DMT400005378	Potato	nucleus	16.04	7.98
Solyc06g061180.1.1	Tomato	nucleus	16.04	7.98
CDY08877	Canola	cytosol	11.32	7.74
Bra017526.1-P	Field mustard	nucleus	13.21	7.65
CDY03194	Canola	nucleus	13.21	7.33
CDY68316	Canola	nucleus	13.21	7.33
CDX76554	Canola	cytosol	10.38	7.1
Bra021032.1-P	Field mustard	cytosol	10.38	7.01
Zm00001d047037_P001	Maize	cytosol	13.21	6.83
Bra012635.1-P	Field mustard	cytosol	12.26	6.81
CDX90440	Canola	cytosol	12.26	6.81
CDY01498	Canola	cytosol	12.26	6.81
AT4G17870.1	Thale cress	cytosol	12.26	6.81
GSMUA_Achr4P19170_001	Banana	cytosol	12.26	6.7
VIT_02s0025g01340.t01	Wine grape	cytosol	11.32	6.49
VIT_04s0008g00890.t01	Wine grape	cytosol	11.32	6.49
CDY70860	Canola	cytosol	11.32	6.45
GSMUA_Achr8P14780_001	Banana	cytosol	12.26	6.31
CDY69797	Canola	cytosol	11.32	6.28
Bra013262.1-P	Field mustard	cytosol	11.32	6.28
KRH45453	Soybean	cytosol	12.26	6.13
VIT_13s0067g01940.t01	Wine grape	plastid	12.26	6.13
Zm00001d030045_P001	Maize	cytosol	12.26	6.13
Os10t0573400-01	Rice	plasma membrane	12.26	6.13
OQU92088	Sorghum	cytosol	12.26	6.13
KRH75621	Soybean	cytosol	12.26	6.07
VIT_16s0050g02620.t01	Wine grape	cytosol	10.38	5.95
VIT_15s0046g01050.t01	Wine grape	cytosol	10.38	5.73
CDY58505	Canola	nucleus	11.32	5.71
Bra024995.1-P	Field mustard	nucleus	11.32	5.71
TraesCS1A01G191700.1	Wheat	cytosol	11.32	5.69
TraesCS1B01G206600.1	Wheat	cytosol, unclear	11.32	5.63
TraesCS1D01G195300.1	Wheat	cytosol	11.32	5.63
CDX77691	Canola	nucleus	11.32	5.58
VIT_02s0012g01270.t01	Wine grape	cytosol	13.21	5.3
VIT_08s0058g00470.t01	Wine grape	plastid	11.32	5.29
AT5G46790.1	Thale cress	nucleus	10.38	4.98
HORVU1Hr1G050110.1	Barley	plastid	11.32	4.38

Protein Annotations

ArrayExpress:VIT_13s0175g00110	EMBL:FN596766	EnsemblPlants:VIT_13s0175g00110.t01	EnsemblPlantsGene:VIT_13s0175g00110	InterPro:DUF936_pln	PANTHER:PTHR31928
PANTHER:PTHR31928:SF4	PFAM:PF06075	ProteinID:CCB62775	ProteinID:CCB62775.1	UniParc:UPI0002108EDF	UniProt:F6I757
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:15044163..15044913

Molecular Weight (calculated)

11529.7 Da

IEP (calculated)

4.574

GRAVY (calculated)

-0.446

Length

106 amino acids

Sequence
(BLAST)

001: MLVLENSIKN ASTKTQAKPC QTVGSKLATL GTPRRPGDGP TASQKPRPPP PTEWIRGNGL DEAIDLGEML RMESQDWFLG FVERFLDADV DISTLSDNGQ
101: IASMLT

Best Arabidopsis Sequence Match ( AT1G08760.1 )
(BLAST)

001: MANLVPGVLL KLLQHMNTDV KIAGEHRSSL LQVISIVPAL AGGELFPNQG FYLKVSDSSH ATYVSLPDEH DDLILSDKIQ LGQYIHVDRV ESSSPVPILR
101: GVRPVPGRHP CVGDPEDIVA THSLGFLSDD KVKNDNNGGV SSKPKERVKA SVKANGSGSD GERIIGNRLS VSISRDDSSD GKKPVSALFR AKSAKSSLSL
201: DVKKESLGKL KTSSGSKSIP SSPTSCYSLP NSFAKFANGI KQQQTVKPKL LEKGSPRMGL SEKGRSLLKA ESPKVGKKLP MIKNFVQGIE FGAKALRKSW
301: EGNLDIRGSD RTKSSLPRRD LTPDSRSLAA PRRSTSSEKL PSKQERANVF ARSSKEHNKI QSTKKVEPTA VLDTKDKTSR PKSTSVEKKS VAENGLPGNL
401: VKVSVNGKRL AAANIQWSSL PPSLSRMGQE VLRHREAAQV VAIEALQEAS ASESLLQCLI MYSDLLSTAK EDDPLPVVEQ FLKLHSGLKN VQVITESLSK
501: LLSLMSSPDN EENRSEEAIK AASEKQKLAA SWVQAALVTN LSPFSVYSSK QAKLAASRSK PVIILESPGN NSSSKTRGNI QNKPTIGSKL VAQGMIRKHR
601: ENSSSQKATS VAGSESPPLN WVKGNGLNEA TDLAEKLQMV SQDWFLGFVE RFLDADVITS SSLSLSDNGQ IAGMLSQLKS VNDWLDEIGS KEDEEGLQEV
701: SKETIDRLRK KIYEYLLTHV ESAAAALGGG GGSVSSPRPK PIETKAKR

Arabidopsis Description

At1g08760 [Source:UniProtKB/TrEMBL;Acc:Q9FRR2]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.