CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX77691
CDX96432
CDY01017
CDY03194
CDY08530
CDY58505
CDY67227
CDY67257
CDY68316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46790.1	CDX72943	AT1G72770.1	19407142
AT5G46790.1	CDX96432	AT1G72770.1	19407142
AT5G46790.1	CDX72943	AT1G72770.1	21847091
AT5G46790.1	CDX96432	AT1G72770.1	21847091
AT5G46790.1	CDY01017	AT3G11410.1	19407142
AT5G46790.1	CDY08530	AT3G11410.1	19407142
AT5G46790.1	CDY67227	AT3G11410.1	19407142
AT5G46790.1	CDY67257	AT3G11410.1	19407142
AT5G46790.1	CDX77691	AT5G46790.1	21847091
AT5G46790.1	CDY03194	AT5G46790.1	21847091
AT5G46790.1	CDY58505	AT5G46790.1	21847091
AT5G46790.1	CDY68316	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024995.1-P	Field mustard	nucleus	99.52	99.52
CDX77691	Canola	nucleus	99.05	96.74
CDY03194	Canola	nucleus	79.05	86.91
CDY68316	Canola	nucleus	79.05	86.91
CDY70860	Canola	cytosol	69.52	78.49
CDY69797	Canola	cytosol	70.48	77.49
CDX90440	Canola	cytosol	70.0	76.96
CDY01498	Canola	cytosol	69.52	76.44
AT5G46790.1	Thale cress	nucleus	79.05	75.11
CDY08877	Canola	cytosol	53.81	72.9
CDX76554	Canola	cytosol	53.33	72.26
PGSC0003DMT400005378	Potato	nucleus	66.67	65.73
Solyc06g061180.1.1	Tomato	nucleus	66.67	65.73
KRH45453	Soybean	cytosol	66.19	65.57
KRH75621	Soybean	cytosol	64.76	63.55
GSMUA_Achr4P19170_001	Banana	cytosol	56.67	61.34
GSMUA_Achr8P14780_001	Banana	cytosol	58.1	59.22
VIT_02s0012g01270.t01	Wine grape	cytosol	71.43	56.82
Zm00001d047037_P001	Maize	cytosol	54.29	55.61
OQU92088	Sorghum	cytosol	55.71	55.19
Zm00001d030045_P001	Maize	cytosol	54.76	54.25
CDY11503	Canola	cytosol	48.1	53.72
TraesCS1A01G191700.1	Wheat	cytosol	53.81	53.55
CDX76731	Canola	cytosol	47.62	53.19
TraesCS1D01G195300.1	Wheat	cytosol	53.81	53.05
TraesCS1B01G206600.1	Wheat	cytosol, unclear	53.81	53.05
Os10t0573400-01	Rice	plasma membrane	53.33	52.83
CDY68675	Canola	cytosol	38.1	49.38
CDY58053	Canola	cytosol	38.1	49.38
CDY18391	Canola	plastid	44.76	46.08
CDY54415	Canola	cytosol	44.76	46.08
CDY25052	Canola	cytosol	40.95	45.99
CDY22516	Canola	plastid	44.76	45.85
CDY48030	Canola	plastid	44.76	45.85
CDX82120	Canola	plastid	44.76	45.85
CDX78879	Canola	cytosol	36.19	45.78
CDY58019	Canola	cytosol	36.19	45.78
CDX91449	Canola	plastid	44.76	45.41
CDY64350	Canola	cytosol	39.52	45.36
CDY54453	Canola	plastid	44.76	45.19
CDX99450	Canola	cytosol	35.71	45.18
CDY49462	Canola	cytosol	39.52	45.11
CDY61488	Canola	cytosol	39.52	45.11
CDY38728	Canola	cytosol	39.05	44.57
CDY53905	Canola	cytosol	39.52	44.38
CDX96197	Canola	cytosol	39.52	44.15
CDY14471	Canola	plastid	43.33	43.96
CDY07739	Canola	plastid	43.33	43.96
CDY04951	Canola	cytosol	40.95	43.65
CDY27022	Canola	cytosol	38.57	43.09
CDY04688	Canola	cytosol	37.62	42.47
CDY70517	Canola	cytosol	37.14	42.16
CDX98844	Canola	cytosol	40.48	41.67
CDX90028	Canola	cytosol	37.14	41.49
CDY72318	Canola	cytosol	40.0	41.38
CDX70150	Canola	cytosol	40.0	41.18
CDY15183	Canola	cytosol	36.67	41.18
CDX89219	Canola	cytosol	36.19	41.08
CDX80959	Canola	cytosol	39.52	40.89
HORVU1Hr1G050110.1	Barley	plastid	53.33	40.88
CDX74368	Canola	cytosol	37.14	40.41
CDX91871	Canola	cytosol	36.67	39.9
CDX93191	Canola	cytosol	37.62	38.92
CDX74796	Canola	cytosol, nucleus, plastid	39.05	38.68
CDY52923	Canola	cytosol	37.62	38.54
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	38.1	37.74
CDY07165	Canola	cytosol	10.48	36.67
CDY07608	Canola	cytosol, mitochondrion	36.67	36.32
CDY24911	Canola	cytosol, mitochondrion	36.67	36.15
VIT_04s0008g00270.t01	Wine grape	cytosol	31.9	23.1
VIT_08s0058g00230.t01	Wine grape	plastid	30.48	19.88
VIT_13s0175g00110.t01	Wine grape	plastid	5.71	11.32

Protein Annotations

EnsemblPlants:CDY58505	EnsemblPlantsGene:GSBRNA2T00023687001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF10604	ProteinID:CDY58505	ProteinID:CDY58505.1	SEG:seg
SUPFAM:SSF55961	UniParc:UPI0004EE82E5	UniProt:A0A078J5Y7	MapMan:11.1.2.1.1.1	:	:

Description

BnaA06g40360DBnaA06g40360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5Y7]

Coordinates

chrLK033674:-:35400..36253

Molecular Weight (calculated)

23915.1 Da

IEP (calculated)

5.017

GRAVY (calculated)

-0.551

Length

210 amino acids

Sequence
(BLAST)

001: MADSEPIREE QQETLHHQMI PSELTHDEFA ELTDSITEFH TYQLGPGRCS SLLAQRIQSP PETVWSVVRR FDRPQIYKHF IKRCSVEEGF EMRVGCTRYV
101: DVISGLPANT SRERLDLLDD ERRVTGFSIT GGEHRLRNYK SVTTVHGFER DGRIWTVVLE SYVVDVPEGN TEEDTRLFAD TVIKLNLQKL ASITEGMSRS
201: SGDGGNPPVM

Best Arabidopsis Sequence Match ( AT5G46790.1 )
(BLAST)

001: MANSESSSSP VNEEENSQRI STLHHQTMPS DLTQDEFTQL SQSIAEFHTY QLGNGRCSSL LAQRIHAPPE TVWSVVRRFD RPQIYKHFIK SCNVSEDFEM
101: RVGCTRDVNV ISGLPANTSR ERLDLLDDDR RVTGFSITGG EHRLRNYKSV TTVHRFEKEE EEERIWTVVL ESYVVDVPEG NSEEDTRLFA DTVIRLNLQK
201: LASITEAMNR NNNNNNSSQV R

Arabidopsis Description

PYL1Abscisic acid receptor PYL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.