Factsheet for Bra024995.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002038.1-P
Bra016034.1-P
Bra017526.1-P
Bra024995.1-P
Bra034845.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46790.1	Bra016034.1-P	AT1G72770.1	19407142
AT5G46790.1	Bra016034.1-P	AT1G72770.1	21847091
AT5G46790.1	Bra002038.1-P	AT3G11410.1	19407142
AT5G46790.1	Bra034845.1-P	AT3G11410.1	19407142
AT5G46790.1	Bra017526.1-P	AT5G46790.1	21847091
AT5G46790.1	Bra024995.1-P	AT5G46790.1	21847091

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58505	Canola	nucleus	99.52	99.52
CDX77691	Canola	nucleus	98.57	96.28
Bra017526.1-P	Field mustard	nucleus	74.76	85.79
Bra012635.1-P	Field mustard	cytosol	69.52	76.44
Bra013262.1-P	Field mustard	cytosol	69.05	75.92
AT5G46790.1	Thale cress	nucleus	78.57	74.66
Bra021032.1-P	Field mustard	cytosol	53.81	71.97
Solyc06g061180.1.1	Tomato	nucleus	66.19	65.26
PGSC0003DMT400005378	Potato	nucleus	66.19	65.26
KRH45453	Soybean	cytosol	65.71	65.09
KRH75621	Soybean	cytosol	64.29	63.08
GSMUA_Achr4P19170_001	Banana	cytosol	56.67	61.34
GSMUA_Achr8P14780_001	Banana	cytosol	58.1	59.22
VIT_02s0012g01270.t01	Wine grape	cytosol	70.95	56.44
Zm00001d047037_P001	Maize	cytosol	54.29	55.61
OQU92088	Sorghum	cytosol	55.71	55.19
Zm00001d030045_P001	Maize	cytosol	54.76	54.25
TraesCS1A01G191700.1	Wheat	cytosol	53.81	53.55
Bra007772.1-P	Field mustard	cytosol	47.62	53.19
TraesCS1B01G206600.1	Wheat	cytosol, unclear	53.81	53.05
TraesCS1D01G195300.1	Wheat	cytosol	53.81	53.05
Os10t0573400-01	Rice	plasma membrane	53.33	52.83
Bra028758.1-P	Field mustard	cytosol	40.48	51.52
Bra025048.1-P	Field mustard	cytosol	37.62	46.47
Bra017125.1-P	Field mustard	plastid	44.29	45.59
Bra008064.1-P	Field mustard	plastid	44.29	45.37
Bra013334.1-P	Field mustard	cytosol	35.71	45.18
Bra029093.1-P	Field mustard	cytosol	39.52	45.11
Bra003077.1-P	Field mustard	cytosol	39.05	44.57
Bra003463.1-P	Field mustard	cytosol	39.52	44.38
Bra005115.1-P	Field mustard	plastid	31.43	44.3
Bra000052.1-P	Field mustard	plastid	42.86	43.48
Bra022634.1-P	Field mustard	cytosol	38.57	43.09
Bra033267.1-P	Field mustard	cytosol	37.14	41.94
Bra005853.1-P	Field mustard	cytosol	40.48	41.87
Bra009113.1-P	Field mustard	cytosol	40.48	41.67
Bra026299.1-P	Field mustard	cytosol	36.19	41.3
HORVU1Hr1G050110.1	Barley	plastid	53.33	40.88
Bra000938.1-P	Field mustard	cytosol	37.14	40.41
Bra017012.1-P	Field mustard	cytosol	37.14	38.05
Bra004967.1-P	Field mustard	mitochondrion	37.62	37.26
Bra000184.1-P	Field mustard	cytosol, mitochondrion	37.14	36.79
VIT_04s0008g00270.t01	Wine grape	cytosol	31.9	23.1
VIT_08s0058g00230.t01	Wine grape	plastid	30.48	19.88
VIT_13s0175g00110.t01	Wine grape	plastid	5.71	11.32

Protein Annotations

EnsemblPlants:Bra024995.1	EnsemblPlants:Bra024995.1-P	EnsemblPlantsGene:Bra024995	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF10604	SEG:seg	SUPFAM:SSF55961
UniParc:UPI000253FB6A	UniProt:M4E889	MapMan:11.1.2.1.1.1	:	:	:

Description

AT5G46790 (E=4e-081) | unknown protein

Coordinates

chrA06:+:24591514..24592146

Molecular Weight (calculated)

23887.1 Da

IEP (calculated)

5.017

GRAVY (calculated)

-0.563

Length

210 amino acids

Sequence
(BLAST)

001: MADSEPIREE QQETLHHQMI PSELTHDEFA ELTDSITEFH TYQLGPGRCS SLLAQRIQSP PETVWSVVRR FDRPQIYKHF IKRCSVEEGF EMRAGCTRYV
101: DVISGLPANT SRERLDLLDD ERRVTGFSIT GGEHRLRNYK SVTTVHGFER DGRIWTVVLE SYVVDVPEGN TEEDTRLFAD TVIKLNLQKL ASITEGMSRS
201: SGDGGNPPVM

Best Arabidopsis Sequence Match ( AT5G46790.1 )
(BLAST)

001: MANSESSSSP VNEEENSQRI STLHHQTMPS DLTQDEFTQL SQSIAEFHTY QLGNGRCSSL LAQRIHAPPE TVWSVVRRFD RPQIYKHFIK SCNVSEDFEM
101: RVGCTRDVNV ISGLPANTSR ERLDLLDDDR RVTGFSITGG EHRLRNYKSV TTVHRFEKEE EEERIWTVVL ESYVVDVPEG NSEEDTRLFA DTVIRLNLQK
201: LASITEAMNR NNNNNNSSQV R

Arabidopsis Description

PYL1Abscisic acid receptor PYL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.