Factsheet for Bra000052.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002038.1-P
Bra002594.1-P
Bra010441.1-P
Bra012604.1-P
Bra013297.1-P
Bra013945.1-P
Bra016034.1-P
Bra019121.1-P
Bra034845.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	Bra016034.1-P	AT1G72770.1	19407142
AT2G38310.1	Bra016034.1-P	AT1G72770.1	19624469
AT2G38310.1	Bra002038.1-P	AT3G11410.1	19407142
AT2G38310.1	Bra034845.1-P	AT3G11410.1	19407142
AT2G38310.1	Bra012604.1-P	AT4G18340.1	19407142
AT2G38310.1	Bra013297.1-P	AT4G18340.1	19407142
AT2G38310.1	Bra010441.1-P	AT4G26080.1	19407142
AT2G38310.1	Bra013945.1-P	AT4G26080.1	19407142
AT2G38310.1	Bra019121.1-P	AT4G26080.1	19407142
AT2G38310.1	Bra002594.1-P	AT5G59220.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07739	Canola	plastid	100.0	100.0
CDY14471	Canola	plastid	99.03	99.03
Bra005115.1-P	Field mustard	plastid	67.63	93.96
AT2G38310.1	Thale cress	plastid	92.27	92.27
Bra017125.1-P	Field mustard	plastid	90.82	92.16
KRH00319	Soybean	cytosol	60.39	70.62
KRH49452	Soybean	plastid	58.94	68.54
Bra028758.1-P	Field mustard	cytosol	52.66	66.06
TraesCS4A01G114400.1	Wheat	cytosol	54.11	62.57
Solyc09g015380.1.1	Tomato	plastid	60.39	62.19
Solyc10g085310.1.1	Tomato	plastid	62.8	61.03
VIT_13s0067g01940.t01	Wine grape	plastid	62.32	60.85
PGSC0003DMT400028658	Potato	nucleus	62.32	60.56
Solyc10g076410.1.1	Tomato	plastid	57.97	59.11
PGSC0003DMT400041080	Potato	mitochondrion	58.94	58.94
PGSC0003DMT400075056	Potato	plastid	60.87	58.88
KRH76014	Soybean	cytosol	60.87	58.33
TraesCS1B01G306800.1	Wheat	mitochondrion	54.59	58.25
VIT_08s0058g00470.t01	Wine grape	plastid	63.77	58.15
GSMUA_Achr9P04600_001	Banana	cytosol	40.1	58.04
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	56.04	57.71
TraesCS1A01G297600.1	Wheat	mitochondrion	55.56	57.21
Zm00001d038436_P001	Maize	plastid	55.07	57.0
GSMUA_Achr6P32790_001	Banana	cytosol	57.49	56.4
Bra009113.1-P	Field mustard	cytosol	55.56	56.37
HORVU1Hr1G070420.1	Barley	mitochondrion	54.59	56.22
Bra017012.1-P	Field mustard	cytosol	55.07	55.61
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	55.56	55.56
TraesCS3A01G348400.1	Wheat	plastid	55.07	55.34
HORVU3Hr1G039010.1	Barley	plastid	55.07	55.34
HORVU3Hr1G088100.1	Barley	plastid	55.07	55.34
TraesCS3D01G342000.1	Wheat	plastid	55.07	55.34
Bra005853.1-P	Field mustard	cytosol	54.11	55.17
Bra004967.1-P	Field mustard	mitochondrion	55.56	54.25
Os05t0473000-01	Rice	cytosol	56.04	53.46
TraesCS2D01G087500.1	Wheat	plastid	55.07	53.27
EES19683	Sorghum	plastid	55.56	53.24
EER92405	Sorghum	plastid	57.0	53.15
TraesCS2B01G105300.1	Wheat	plastid	55.56	53.0
Bra025048.1-P	Field mustard	cytosol	43.48	52.94
Zm00001d047705_P001	Maize	plastid	55.56	52.75
GSMUA_AchrUn_...	Banana	plastid	39.61	51.9
Bra000184.1-P	Field mustard	cytosol, mitochondrion	53.14	51.89
TraesCS4D01G191200.1	Wheat	cytosol	56.04	51.79
TraesCS4B01G189800.1	Wheat	cytosol	56.04	51.79
GSMUA_Achr9P17980_001	Banana	cytosol	37.2	51.68
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	54.59	51.36
HORVU4Hr1G055220.1	Barley	cytosol	55.56	51.34
Os03t0297600-01	Rice	cytosol	56.04	50.66
Bra013334.1-P	Field mustard	cytosol	40.1	50.0
Zm00001d043014_P001	Maize	cytosol	50.72	49.3
GSMUA_Achr5P29490_001	Banana	plastid	38.16	48.77
Bra012635.1-P	Field mustard	cytosol	44.93	48.69
GSMUA_Achr8P21220_001	Banana	cytosol	39.61	48.24
GSMUA_Achr11P...	Banana	cytosol, plastid	36.23	47.47
Bra007772.1-P	Field mustard	cytosol	43.0	47.34
Bra033267.1-P	Field mustard	cytosol	42.51	47.31
Bra003077.1-P	Field mustard	cytosol	41.55	46.74
Bra026299.1-P	Field mustard	cytosol	41.55	46.74
Bra013262.1-P	Field mustard	cytosol	43.0	46.6
Bra029093.1-P	Field mustard	cytosol	41.06	46.2
Bra022634.1-P	Field mustard	cytosol	41.06	45.21
GSMUA_Achr10P...	Banana	cytosol, plastid	42.51	44.44
Bra003463.1-P	Field mustard	cytosol	40.1	44.38
Os01t0827800-00	Rice	plastid	54.11	43.75
Bra000938.1-P	Field mustard	cytosol	40.58	43.52
Bra024995.1-P	Field mustard	nucleus	43.48	42.86
Bra021032.1-P	Field mustard	cytosol	32.37	42.68
TraesCS2A01G089400.1	Wheat	plastid	55.07	39.86
Bra008064.1-P	Field mustard	plastid	39.13	39.51
Bra017526.1-P	Field mustard	nucleus	34.78	39.34
OQU87775	Sorghum	endoplasmic reticulum, extracellular	48.31	36.76
Zm00001d012475_P001	Maize	cytosol	50.72	33.65

Protein Annotations

MapMan:11.1.2.1.1.1	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra000052	EnsemblPlants:Bra000052.1	EnsemblPlants:Bra000052.1-P	GO:GO:0003674
GO:GO:0004864	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009738	GO:GO:0009987	GO:GO:0030234	GO:GO:0038023	GO:GO:0043086	InterPro:IPR023393
UniProt:M4C774	PFAM:PF10604	PANTHER:PTHR31213	PANTHER:PTHR31213:SF48	InterPro:Polyketide_cyclase/dehydratase	SUPFAM:SSF55961
InterPro:START-like_dom_sf	UniParc:UPI0002540093	SEG:seg	:	:	:

Description

AT2G38310 (E=2e-101) | unknown protein

Coordinates

chrA03:+:9057577..9058200

Molecular Weight (calculated)

22241.4 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.047

Length

207 amino acids

Sequence
(BLAST)

001: MLAVHRPSSA VTDGDSVQVP MMIASFQKRF PSLSRDTAAA SFHTHEVGPN QCCSAVIQEI SAPISAVWSV VRRFDNPQAY KHFLKSCNVI GGDGGNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHS SPICGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAESSAVE
201: GKKKTSM

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.