Factsheet for PGSC0003DMT400041080

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006608
PGSC0003DMT400043146
PGSC0003DMT400046382
PGSC0003DMT400049695
PGSC0003DMT400069947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT2G38310.1	PGSC0003DMT400006608	AT1G72770.1	19624469
AT2G38310.1	PGSC0003DMT400043146	AT3G11410.1	19407142
AT2G38310.1	PGSC0003DMT400069947	AT3G11410.1	19407142
AT2G38310.1	PGSC0003DMT400046382	AT4G26080.1	19407142
AT2G38310.1	PGSC0003DMT400049695	AT5G59220.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076410.1.1	Tomato	plastid	90.34	92.12
PGSC0003DMT400028658	Potato	nucleus	78.74	76.53
PGSC0003DMT400075056	Potato	plastid	74.88	72.43
KRH00319	Soybean	cytosol	58.94	68.93
KRH49452	Soybean	plastid	57.49	66.85
KRH76014	Soybean	cytosol	66.18	63.43
PGSC0003DMT400053120	Potato	cytosol, plastid	60.87	62.69
PGSC0003DMT400053119	Potato	cytosol, plastid	60.87	62.69
PGSC0003DMT400053102	Potato	cytosol, plastid	60.87	62.69
VIT_13s0067g01940.t01	Wine grape	plastid	63.28	61.79
PGSC0003DMT400061535	Potato	plastid	64.25	61.01
VIT_08s0058g00470.t01	Wine grape	plastid	66.67	60.79
CDY18391	Canola	plastid	59.9	60.78
CDY54415	Canola	cytosol	59.9	60.78
Bra017125.1-P	Field mustard	plastid	59.9	60.78
AT2G38310.1	Thale cress	plastid	59.9	59.9
Bra005115.1-P	Field mustard	plastid	43.0	59.73
CDY54453	Canola	plastid	59.9	59.62
CDX91449	Canola	plastid	59.42	59.42
TraesCS4A01G114400.1	Wheat	cytosol	51.21	59.22
CDY14471	Canola	plastid	58.94	58.94
CDY07739	Canola	plastid	58.94	58.94
Bra000052.1-P	Field mustard	plastid	58.94	58.94
PGSC0003DMT400069734	Potato	mitochondrion, plastid	57.97	57.69
GSMUA_Achr9P04600_001	Banana	cytosol	39.13	56.64
Zm00001d038436_P001	Maize	plastid	54.11	56.0
GSMUA_Achr6P32790_001	Banana	cytosol	57.0	55.92
TraesCS1B01G306800.1	Wheat	mitochondrion	52.17	55.67
TraesCS3D01G342000.1	Wheat	plastid	54.59	54.85
TraesCS3A01G348400.1	Wheat	plastid	54.59	54.85
TraesCS3B01G380300.1	Wheat	mitochondrion, plastid	54.59	54.59
HORVU3Hr1G039010.1	Barley	plastid	54.11	54.37
HORVU3Hr1G088100.1	Barley	plastid	54.11	54.37
GSMUA_Achr9P17980_001	Banana	cytosol	39.13	54.36
TraesCS2D01G087500.1	Wheat	plastid	55.56	53.74
HORVU1Hr1G070420.1	Barley	mitochondrion	52.17	53.73
TraesCS2B01G105300.1	Wheat	plastid	56.04	53.46
TraesCS1D01G293600.1	Wheat	mitochondrion, plastid	51.69	53.23
TraesCS1A01G297600.1	Wheat	mitochondrion	51.69	53.23
GSMUA_Achr5P29490_001	Banana	plastid	41.06	52.47
EES19683	Sorghum	plastid	54.59	52.31
GSMUA_AchrUn_...	Banana	plastid	39.61	51.9
Os05t0473000-01	Rice	cytosol	54.11	51.61
Zm00001d047705_P001	Maize	plastid	53.62	50.92
HORVU4Hr1G055220.1	Barley	cytosol	55.07	50.89
GSMUA_Achr11P...	Banana	cytosol, plastid	38.65	50.63
TraesCS4D01G191200.1	Wheat	cytosol	54.59	50.45
TraesCS4B01G189800.1	Wheat	cytosol	54.59	50.45
PGSC0003DMT400023511	Potato	cytosol	44.93	50.27
PGSC0003DMT400075340	Potato	cytosol	45.89	50.0
EER92405	Sorghum	plastid	53.62	50.0
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	52.66	49.55
Os03t0297600-01	Rice	cytosol	54.59	49.34
Zm00001d043014_P001	Maize	cytosol	50.72	49.3
PGSC0003DMT400012888	Potato	cytosol	42.03	49.15
PGSC0003DMT400077008	Potato	cytosol	44.44	48.94
GSMUA_Achr8P21220_001	Banana	cytosol	39.61	48.24
PGSC0003DMT400000606	Potato	cytosol	42.03	46.77
PGSC0003DMT400031686	Potato	cytosol	42.03	46.03
GSMUA_Achr10P...	Banana	cytosol, plastid	41.55	43.43
PGSC0003DMT400005378	Potato	nucleus	43.96	42.72
Os01t0827800-00	Rice	plastid	52.17	42.19
TraesCS2A01G089400.1	Wheat	plastid	55.56	40.21
PGSC0003DMT400045156	Potato	nucleus	44.44	39.83
PGSC0003DMT400026521	Potato	cytosol	35.75	38.74
OQU87775	Sorghum	endoplasmic reticulum, extracellular	49.28	37.5
Zm00001d012475_P001	Maize	cytosol	50.72	33.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400041080	EnsemblPlantsGene:PGSC0003DMG400015897	EntrezGene:102591866	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF48	PFAM:PF10604	PGSC:PGSC0003DMG400015897	RefSeq:XP_006363617.1
SUPFAM:SSF55961	UniParc:UPI000294B1AB	UniProt:M1BAW2	MapMan:11.1.2.1.1.1	:	:

Description

Abscisic acid receptor PYL4 [Source:PGSC_GENE;Acc:PGSC0003DMG400015897]

Coordinates

chr10:-:49647857..49648738

Molecular Weight (calculated)

22817.1 Da

IEP (calculated)

7.531

GRAVY (calculated)

-0.303

Length

207 amino acids

Sequence
(BLAST)

001: MIPNPQESSI LLQRITSNNP SNCNKQSHQS LQRHTPIPCT EEVPDSVVKY HAHLVGPNQC CSAAIQRISA PVSTVWSVVR RFDNPQAYKH FVKSCHLIDG
101: DGNVGTLREV RVISGLPAVN STERLEILDE ERHVISFSVV GGDHRLANYK SVTTLHPEPL GNGTIVVESY VVDVPKGNTR DETCVFVGTI VKCNLQSLKQ
201: IAENSSR

Best Arabidopsis Sequence Match ( AT2G38310.1 )
(BLAST)

001: MLAVHRPSSA VSDGDSVQIP MMIASFQKRF PSLSRDSTAA RFHTHEVGPN QCCSAVIQEI SAPISTVWSV VRRFDNPQAY KHFLKSCSVI GGDGDNVGSL
101: RQVHVVSGLP AASSTERLDI LDDERHVISF SVVGGDHRLS NYRSVTTLHP SPISGTVVVE SYVVDVPPGN TKEETCDFVD VIVRCNLQSL AKIAENTAAE
201: SKKKMSL

Arabidopsis Description

PYL4Abscisic acid receptor PYL4 [Source:UniProtKB/Swiss-Prot;Acc:O80920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.