Factsheet for PGSC0003DMT400012888

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006608
PGSC0003DMT400046382

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01360.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT1G01360.1	PGSC0003DMT400006608	AT1G72770.1	19407143
AT1G01360.1	PGSC0003DMT400046382	AT4G26080.1	19407143
AT1G01360.1	PGSC0003DMT400046382	AT5G57050.1	19407143
AT4G01026.1	PGSC0003DMT400006608	AT1G72770.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g055990.1.1	Tomato	cytosol	97.74	95.58
PGSC0003DMT400031686	Potato	cytosol	90.4	84.66
VIT_02s0025g01340.t01	Wine grape	cytosol	87.01	83.24
KRH47929	Soybean	cytosol	80.79	77.3
PGSC0003DMT400023511	Potato	cytosol	79.66	76.22
HORVU0Hr1G032390.2	Barley	cytosol, extracellular	36.16	74.42
GSMUA_Achr10P...	Banana	cytosol	75.71	72.04
GSMUA_Achr10P...	Banana	cytosol	75.71	72.04
AT1G01360.1	Thale cress	cytosol	75.14	71.12
PGSC0003DMT400000606	Potato	cytosol	74.58	70.97
GSMUA_Achr2P19970_001	Banana	cytosol	73.45	69.89
CDY04688	Canola	cytosol	72.88	69.35
Bra033267.1-P	Field mustard	cytosol	72.88	69.35
CDY15183	Canola	cytosol	72.88	68.98
GSMUA_AchrUn_...	Banana	cytosol	72.32	68.82
CDX90028	Canola	cytosol	72.88	68.62
CDY25052	Canola	cytosol	71.75	67.91
Bra003463.1-P	Field mustard	cytosol	71.19	67.38
EES17886	Sorghum	cytosol	74.58	67.01
CDY53905	Canola	cytosol	70.62	66.84
Zm00001d037719_P001	Maize	cytosol	74.01	66.5
KRH06494	Soybean	cytosol, extracellular, vacuole	71.75	66.49
CDX74368	Canola	cytosol	72.32	66.32
Zm00001d010445_P001	Maize	cytosol	73.45	65.99
TraesCS1A01G126800.1	Wheat	cytosol	76.27	65.85
TraesCS1B01G145800.1	Wheat	cytosol	76.27	65.85
TraesCS1D01G126900.1	Wheat	cytosol	76.27	65.85
Bra000938.1-P	Field mustard	cytosol	71.75	65.8
CDX91871	Canola	cytosol	71.19	65.28
Os02t0255500-01	Rice	cytosol	75.14	65.2
Os05t0213500-01	Rice	cytosol, nucleus	76.84	65.07
GSMUA_Achr3P03480_001	Banana	cytosol	74.01	63.59
EES04864	Sorghum	cytosol	75.71	63.51
Zm00001d016105_P001	Maize	cytosol	75.14	62.74
GSMUA_Achr8P19910_001	Banana	mitochondrion	73.45	62.2
CDY07165	Canola	cytosol	20.9	61.67
Zm00001d053396_P001	Maize	cytosol	73.45	59.91
AT4G01026.1	Thale cress	cytosol	70.06	58.77
Zm00001d002533_P001	Maize	cytosol	41.81	58.73
GSMUA_Achr2P15420_001	Banana	cytosol, mitochondrion, nucleus, plastid	72.88	56.58
Os02t0255300-00	Rice	cytosol, plastid	55.93	55.0
Os06t0527800-01	Rice	cytosol	61.58	52.91
Os06t0526400-00	Rice	cytosol	57.06	51.53
Os06t0528300-00	Rice	cytosol	59.32	50.97
TraesCS7B01G232100.1	Wheat	cytoskeleton, cytosol, nucleus	55.93	50.77
HORVU7Hr1G079270.1	Barley	cytosol	55.93	50.25
TraesCS7D01G328000.1	Wheat	cytosol	55.93	50.25
TraesCS7A01G350800.1	Wheat	cytosol	54.8	49.24
HORVU1Hr1G030390.2	Barley	extracellular, mitochondrion, plasma membrane	76.27	46.39
PGSC0003DMT400053120	Potato	cytosol, plastid	49.72	43.78
PGSC0003DMT400053119	Potato	cytosol, plastid	49.72	43.78
PGSC0003DMT400053102	Potato	cytosol, plastid	49.72	43.78
HORVU3Hr1G054230.1	Barley	mitochondrion	38.42	42.77
PGSC0003DMT400077008	Potato	cytosol	45.2	42.55
PGSC0003DMT400075340	Potato	cytosol	45.2	42.11
PGSC0003DMT400041080	Potato	mitochondrion	49.15	42.03
PGSC0003DMT400028658	Potato	nucleus	48.59	40.38
PGSC0003DMT400075056	Potato	plastid	48.59	40.19
PGSC0003DMT400069734	Potato	mitochondrion, plastid	46.89	39.9
PGSC0003DMT400026521	Potato	cytosol	42.37	39.27
PGSC0003DMT400061535	Potato	plastid	48.02	38.99
PGSC0003DMT400005378	Potato	nucleus	45.2	37.56
PGSC0003DMT400045156	Potato	nucleus	46.89	35.93
Os06t0526466-00	Rice	cytosol, mitochondrion	23.16	29.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400012888	EnsemblPlantsGene:PGSC0003DMG400005016	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF4	PFAM:PF10604	PGSC:PGSC0003DMG400005016	SUPFAM:SSF55961	UniParc:UPI00029588D8
UniProt:M1A1Y8	MapMan:11.1.2.1.1.1	:	:	:	:

Description

Pathogenesis-induced protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005016]

Coordinates

chr12:+:53685700..53690893

Molecular Weight (calculated)

20188.1 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.337

Length

177 amino acids

Sequence
(BLAST)

001: MEDEYIRRHH RHVLNDNQCS SSLVKRIRAP VNLVWSLVRR FDQPQRYKPF VSRCVVQGDL EIGSVREVNV RSGLPATTSK ERLELLDDEE HIFGVKIVGG
101: DHRLQNYSSI ITVHPEVIDG RPGTIVIESF VVDIPDGNTK DETCFFVEAL IRCNLKSLAD VSERLAVQGH TEPIDRM

Best Arabidopsis Sequence Match ( AT1G01360.1 )
(BLAST)

001: MMDGVEGGTA MYGGLETVQY VRTHHQHLCR ENQCTSALVK HIKAPLHLVW SLVRRFDQPQ KYKPFVSRCT VIGDPEIGSL REVNVKSGLP ATTSTERLEL
101: LDDEEHILGI KIIGGDHRLK NYSSILTVHP EIIEGRAGTM VIESFVVDVP QGNTKDETCY FVEALIRCNL KSLADVSERL ASQDITQ

Arabidopsis Description

PYL9RCAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4H4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.