Factsheet for PGSC0003DMT400006608

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400005378
PGSC0003DMT400009070
PGSC0003DMT400012888
PGSC0003DMT400023511
PGSC0003DMT400025895
PGSC0003DMT400026521
PGSC0003DMT400028658
PGSC0003DMT400031686
PGSC0003DMT400041080
PGSC0003DMT400053102
PGSC0003DMT400053119
PGSC0003DMT400053120
PGSC0003DMT400061535
PGSC0003DMT400069734
PGSC0003DMT400075056
PGSC0003DMT400075340
PGSC0003DMT400077008

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72770.1	PGSC0003DMT400012888	AT1G01360.1	19407142
AT1G72770.1	PGSC0003DMT400031686	AT1G01360.1	19407142
AT1G72770.1	PGSC0003DMT400012888	AT1G01360.1	19407143
AT1G72770.1	PGSC0003DMT400031686	AT1G01360.1	19407143
AT1G72770.1	PGSC0003DMT400075340	AT2G26040.1	19407142
AT1G72770.1	PGSC0003DMT400077008	AT2G26040.1	19407142
AT1G72770.1	PGSC0003DMT400025895	AT2G33610.1	19033529
AT1G72770.1	PGSC0003DMT400028658	AT2G38310.1	19407142
AT1G72770.1	PGSC0003DMT400041080	AT2G38310.1	19407142
AT1G72770.1	PGSC0003DMT400075056	AT2G38310.1	19407142
AT1G72770.1	PGSC0003DMT400028658	AT2G38310.1	19624469
AT1G72770.1	PGSC0003DMT400041080	AT2G38310.1	19624469
AT1G72770.1	PGSC0003DMT400075056	AT2G38310.1	19624469
AT1G72770.1	PGSC0003DMT400053102	AT2G40330.1	19407142
AT1G72770.1	PGSC0003DMT400053119	AT2G40330.1	19407142
AT1G72770.1	PGSC0003DMT400053120	AT2G40330.1	19407142
AT1G72770.1	PGSC0003DMT400061535	AT2G40330.1	19407142
AT1G72770.1	PGSC0003DMT400069734	AT2G40330.1	19407142
AT1G72770.1	PGSC0003DMT400053102	AT2G40330.1	19624469
AT1G72770.1	PGSC0003DMT400053119	AT2G40330.1	19624469
AT1G72770.1	PGSC0003DMT400053120	AT2G40330.1	19624469
AT1G72770.1	PGSC0003DMT400061535	AT2G40330.1	19624469
AT1G72770.1	PGSC0003DMT400069734	AT2G40330.1	19624469
AT1G72770.1	PGSC0003DMT400053102	AT2G40330.1	21847091
AT1G72770.1	PGSC0003DMT400053119	AT2G40330.1	21847091
AT1G72770.1	PGSC0003DMT400053120	AT2G40330.1	21847091
AT1G72770.1	PGSC0003DMT400061535	AT2G40330.1	21847091
AT1G72770.1	PGSC0003DMT400069734	AT2G40330.1	21847091
AT1G72770.1	PGSC0003DMT400012888	AT4G01026.1	19407142
AT1G72770.1	PGSC0003DMT400031686	AT4G01026.1	19407142
AT1G72770.1	PGSC0003DMT400005378	AT4G17870.1	19407142
AT1G72770.1	PGSC0003DMT400005378	AT4G17870.1	19624469
AT1G72770.1	PGSC0003DMT400005378	AT4G17870.1	21847091
AT1G72770.1	PGSC0003DMT400023511	AT4G27920.1	19407142
AT1G72770.1	PGSC0003DMT400026521	AT5G45860.1	19407142
AT1G72770.1	PGSC0003DMT400026521	AT5G45870.1	19407142
AT1G72770.1	PGSC0003DMT400005378	AT5G46790.1	19407142
AT1G72770.1	PGSC0003DMT400009070	AT5G66400.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021210	Potato	cytosol, nucleus, peroxisome	12.84	77.78
CDX96761	Canola	cytosol	41.65	64.86
GSMUA_Achr7P24000_001	Banana	cytosol	46.42	64.54
Bra016595.1-P	Field mustard	cytosol	47.89	63.66
CDX83901	Canola	cytosol	40.55	63.14
VIT_09s0002g01850.t01	Wine grape	cytosol, peroxisome, plastid	63.3	62.96
HORVU7Hr1G029040.1	Barley	cytosol, peroxisome	33.21	61.77
CDX72943	Canola	cytosol, peroxisome, plastid	52.84	60.63
Os01t0583100-01	Rice	cytosol	43.49	59.85
Bra016034.1-P	Field mustard	cytosol, peroxisome, plastid	52.29	58.88
CDX96432	Canola	cytosol, peroxisome, plastid	52.29	58.88
HORVU3Hr1G067380.4	Barley	cytosol	34.86	56.38
CDY26234	Canola	cytosol	51.01	56.05
AT1G72770.1	Thale cress	cytosol	52.11	55.58
HORVU3Hr1G067360.1	Barley	cytosol, peroxisome	5.14	54.9
Bra025964.1-P	Field mustard	cytosol	51.01	54.72
CDY48313	Canola	cytosol	50.28	54.69
AT1G17550.1	Thale cress	cytosol	51.01	54.4
TraesCS1A01G358600.1	Wheat	cytosol	37.25	53.42
TraesCS1D01G449700.1	Wheat	cytosol	40.0	53.17
TraesCS1D01G363500.1	Wheat	cytosol	37.25	53.14
TraesCS1B01G375100.1	Wheat	cytosol	37.06	53.02
Zm00001d038846_P001	Maize	cytosol, nucleus	35.96	52.97
Zm00001d011202_P002	Maize	cytosol, peroxisome, plastid	42.57	52.97
TraesCS1A01G441200.1	Wheat	cytosol	40.0	52.91
HORVU1Hr1G080290.6	Barley	cytosol	37.25	52.86
GSMUA_Achr8P05700_001	Banana	cytosol, peroxisome, plasma membrane	42.2	52.75
Zm00001d009747_P001	Maize	cytosol	40.92	52.72
KXG22422	Sorghum	cytosol, nucleus, plastid	36.7	52.63
Zm00001d011132_P001	Maize	cytosol, nucleus	14.31	52.35
TraesCS3D01G249000.1	Wheat	cytosol	36.33	52.24
Zm00001d039163_P002	Maize	cytosol	40.92	51.98
PGSC0003DMT400075333	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	50.83	51.68
HORVU1Hr1G094840.9	Barley	extracellular, mitochondrion	39.63	51.67
EES00964	Sorghum	peroxisome, plasma membrane, vacuole	45.69	51.66
HORVU3Hr1G050340.1	Barley	plasma membrane, vacuole	45.14	51.57
TraesCS3A01G249000.1	Wheat	cytosol	36.33	51.3
TraesCS3D01G212100.1	Wheat	peroxisome, plasma membrane, vacuole	44.77	51.26
KXG22681	Sorghum	cytosol	40.18	51.17
TraesCS3A01G209200.1	Wheat	peroxisome, plasma membrane, vacuole	44.77	50.94
OQU87413	Sorghum	cytosol	35.78	50.91
TraesCS3B01G240000.1	Wheat	peroxisome, plasma membrane, vacuole	44.59	50.73
Zm00001d044301_P001	Maize	cytosol, nucleus	44.59	50.21
Os05t0592800-02	Rice	endoplasmic reticulum, vacuole	40.73	49.89
TraesCS1B01G475700.1	Wheat	cytosol	40.18	49.21
TraesCS3B01G277900.1	Wheat	cytosol	36.88	48.2
GSMUA_Achr3P26270_001	Banana	cytosol, peroxisome, plastid	43.85	48.19
PGSC0003DMT400094534	Potato	cytosol	17.25	47.0
Os05t0537400-00	Rice	cytosol	25.14	46.28
Zm00001d011131_P001	Maize	cytosol	23.49	45.39
PGSC0003DMT400046382	Potato	cytosol	44.4	44.49
PGSC0003DMT400090149	Potato	cytosol	26.42	43.37
Solyc08g062650.2.1	Tomato	extracellular	34.5	40.09
PGSC0003DMT400019552	Potato	cytosol, peroxisome, plastid	7.71	39.25
PGSC0003DMT400091100	Potato	cytosol, nucleus, plastid	24.22	38.6
PGSC0003DMT400023517	Potato	nucleus	26.97	36.84
PGSC0003DMT400077989	Potato	cytosol	27.16	36.1
TraesCS7A01G047900.1	Wheat	cytosol, mitochondrion, peroxisome	7.34	36.04
PGSC0003DMT400069947	Potato	cytosol	27.52	35.89
PGSC0003DMT400043146	Potato	nucleus	26.79	35.61
PGSC0003DMT400050448	Potato	cytosol	25.32	34.67
PGSC0003DMT400078131	Potato	golgi, vacuole	15.05	26.2
PGSC0003DMT400057134	Potato	mitochondrion	11.74	21.92
PGSC0003DMT400049695	Potato	extracellular	2.57	12.73

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102579707	MapMan:11.1.2.1.1.2	MapMan:18.4.24.2.1	Gene3D:3.60.40.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	UniProt:M0ZRP5	PFAM:PF00481
EnsemblPlantsGene:PGSC0003DMG400002573	PGSC:PGSC0003DMG400002573	EnsemblPlants:PGSC0003DMT400006608	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF516	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI0002955F5D	RefSeq:XP_006342955.1	RefSeq:XP_006342956.1	RefSeq:XP_015162226.1	RefSeq:XP_015162227.1
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2C ABI2 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400002573]

Coordinates

chr3:+:61111414..61117579

Molecular Weight (calculated)

58941.5 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.082

Length

545 amino acids

Sequence
(BLAST)

001: MEEMSPAVAV TLSLSSSICD NPAISNHVEI TRLKLVTDTA SLLSDPASLL HAESNTSWNG NSNGMKVGVG RIPLLTLGES SGKCSLPQTL LGAENGLIVS
101: DSIIQGSDED EILSVGEDPC GINGEELLPL GTSLQLSLPI AVEIEGINNG QIVAKVISLE ERSFDRKVSN TIVALPDDEI TSGPTLKASV VALPLPSEKE
201: PVKESVKSVF ELECVPLWGS VSICGKRPEM EDALMAVPNF MKIPIKMFIG DRVIDGLSQS LSHLTSHFYG VYDGHGGSQV ADYCCKRVHL ALVEELKLPK
301: HDLVDGSVRD TRQVQWEKVF TNCFLKVDDE VGGKVNIDLC DDNMNTSSCT SEPIAPETVG STAVVAVICS SHIIVANCGD SRAVLYRGKE AVALSIDHKP
401: SREDEYARIE ASGGKVIQWN GHRVFGVLAM SRSIGDRYLK PWIIPEPEVM FVPRAREDEC LVLASDGLWD VMTNEEACEV ARRRILLWHK KNGTNSLPER
501: GQGVDPAAQA AAEYLSSMAL QKGSKDNISV IVVDLKAHRK FKSKS

Best Arabidopsis Sequence Match ( AT1G72770.3 )
(BLAST)

001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GDRYLKPYVI PEPEVTFMPR SREDECLILA SDGLWDVMNN QEVCEIARRR ILMWHKKNGA PPLAERGKGI DPACQAAADY LSMLALQKGS KDNISIIVID
501: LKAQRKFKTR T

Arabidopsis Description

HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.