Factsheet for PGSC0003DMT400050448

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051940.2.1	Tomato	cytosol	81.41	73.3
GSMUA_Achr3P32040_001	Banana	cytosol, peroxisome, plastid	30.15	59.41
PGSC0003DMT400094534	Potato	cytosol	28.14	56.0
GSMUA_Achr2P19990_001	Banana	cytosol	29.4	49.58
PGSC0003DMT400023517	Potato	nucleus	47.49	47.37
Os05t0572700-02	Rice	cytosol	42.71	44.62
GSMUA_Achr8P04220_001	Banana	cytosol, nucleus, peroxisome	37.69	44.38
KRG94219	Soybean	plastid	41.71	44.03
Zm00001d009626_P001	Maize	nucleus	40.7	43.2
KRH16556	Soybean	plastid	41.71	43.01
TraesCS3A01G237800.1	Wheat	plastid	41.96	42.39
Os01t0656200-01	Rice	cytosol, nucleus, plastid	42.71	42.18
TraesCS1A01G411200.1	Wheat	nucleus	40.45	42.15
HORVU3Hr1G059170.2	Barley	cytosol, nucleus	42.21	42.11
TraesCS3D01G238000.1	Wheat	cytosol, nucleus, plastid	42.21	42.0
TraesCS1D01G419000.1	Wheat	nucleus	39.7	41.91
VIT_16s0050g02680.t01	Wine grape	nucleus	30.9	41.69
OQU78453	Sorghum	nucleus	41.21	41.52
TraesCS1B01G441400.1	Wheat	cytosol	39.95	41.41
HORVU1Hr1G090360.2	Barley	cytosol, mitochondrion, nucleus	40.7	41.01
TraesCS3B01G266200.1	Wheat	nucleus, peroxisome, plastid	41.71	40.1
Zm00001d011495_P001	Maize	cytosol	38.94	39.34
PGSC0003DMT400090149	Potato	cytosol	32.16	38.55
GSMUA_Achr10P...	Banana	plastid	34.92	37.57
Zm00001d044015_P001	Maize	cytosol	38.69	37.56
PGSC0003DMT400019552	Potato	cytosol, peroxisome, plastid	9.8	36.45
GSMUA_Achr2P19980_001	Banana	vacuole	4.77	35.19
PGSC0003DMT400091100	Potato	cytosol, nucleus, plastid	29.65	34.5
PGSC0003DMT400021210	Potato	cytosol, nucleus, peroxisome	7.54	33.33
PGSC0003DMT400069947	Potato	cytosol	34.92	33.25
PGSC0003DMT400077989	Potato	cytosol	34.17	33.17
KXG33023	Sorghum	nucleus	38.94	32.7
PGSC0003DMT400043146	Potato	nucleus	32.91	31.95
PGSC0003DMT400075333	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.67	25.75
PGSC0003DMT400006608	Potato	plastid	34.67	25.32
PGSC0003DMT400046382	Potato	cytosol	31.91	23.35
PGSC0003DMT400078131	Potato	golgi, vacuole	18.09	23.0
PGSC0003DMT400057134	Potato	mitochondrion	14.57	19.86
PGSC0003DMT400049695	Potato	extracellular	2.01	7.27

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872
InterPro:IPR001932	InterPro:IPR036457	UniProt:M1BQA8	PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400019604	PGSC:PGSC0003DMG400019604
EnsemblPlants:PGSC0003DMT400050448	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF527	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0002962C16
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400019604]

Coordinates

chr6:-:38214824..38219039

Molecular Weight (calculated)

44433.1 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.442

Length

398 amino acids

Sequence
(BLAST)

001: MPDISSTNAN VVVTNYKCYK KKRNQNIGVT NDDNDEKTRN GEEYREKKEI VVSMLFTMSK TTSHHQQQHS ENSVVLTRTP SNVDEVSKET EDLQSITRYS
101: HGSISLIGGR RQMKDALSVK LDLLTNYDFF GVYDGHGGSC VAHACRDLLH KVLMEVILEE DGKFEEINWA KVMMTSFYKM DKEVNRINGA EVATIGSTIV
201: VAVVGKEEVI VANCGDSRAV LSRGGVALAL SNDHKPDRPD ELERIEKSGG KVINWNGHRV LGVLATSRSI GHTKKRRRKL TYRISVFLNI QCDKRVNARD
301: NYLKPYVIPE PKVTVSKRTD GDEFLILASD GLWDVVPNDV ACDFTRKCLN GQIRRCKNGS EHSQNKVMKE NVAAKAATLL AELAISRGST DSISIIIV

Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)

001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA

Arabidopsis Description

AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.