Factsheet for PGSC0003DMT400049695

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002746
PGSC0003DMT400005378
PGSC0003DMT400011768
PGSC0003DMT400028658
PGSC0003DMT400041080
PGSC0003DMT400075056
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	PGSC0003DMT400080484	AT1G30270.1	17898163
AT1G07430.1	PGSC0003DMT400002746	AT2G26650.1	17898163
AT1G07430.1	PGSC0003DMT400011768	AT3G06610.1	21798944
AT5G59220.1	PGSC0003DMT400028658	AT2G38310.1	19407142
AT5G59220.1	PGSC0003DMT400041080	AT2G38310.1	19407142
AT5G59220.1	PGSC0003DMT400075056	AT2G38310.1	19407142
AT5G59220.1	PGSC0003DMT400005378	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078131	Potato	golgi, vacuole	15.45	5.43
TraesCS3A01G362200.1	Wheat	nucleus, plastid	14.55	4.09
HORVU3Hr1G085930.3	Barley	nucleus, plastid	14.55	4.07
TraesCS3D01G355900.1	Wheat	plastid	14.55	4.03
Zm00001d042886_P001	Maize	nucleus	14.55	3.92
EES01744	Sorghum	plastid	14.55	3.88
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	14.55	3.87
GSMUA_Achr6P15180_001	Banana	cytosol	12.73	3.78
CDY36606	Canola	nucleus	8.18	3.6
GSMUA_Achr11P...	Banana	cytosol	12.73	3.54
TraesCS3B01G394600.3	Wheat	plastid	13.64	3.5
AT1G07430.1	Thale cress	nucleus	13.64	3.39
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	12.73	3.38
CDY06705	Canola	nucleus	11.82	3.33
AT2G29380.1	Thale cress	nucleus	10.91	3.31
CDY45436	Canola	cytosol	10.91	3.28
PGSC0003DMT400077989	Potato	cytosol	11.82	3.17
GSMUA_Achr5P29000_001	Banana	cytosol	10.91	3.14
Bra015579.1-P	Field mustard	nucleus	11.82	3.05
CDY40181	Canola	cytosol	10.0	3.01
Bra018398.1-P	Field mustard	cytosol	10.0	3.01
EER92493	Sorghum	nucleus	10.91	2.99
PGSC0003DMT400075333	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	14.55	2.99
CDY06259	Canola	nucleus	11.82	2.98
Bra031574.1-P	Field mustard	nucleus	11.82	2.98
Os03t0268600-01	Rice	nucleus	10.91	2.97
PGSC0003DMT400043146	Potato	nucleus	10.91	2.93
PGSC0003DMT400069947	Potato	cytosol	10.91	2.87
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	9.09	2.79
Os09t0325700-01	Rice	cytosol	9.09	2.79
CDY10275	Canola	nucleus	10.91	2.79
Zm00001d028574_P001	Maize	nucleus	10.0	2.78
PGSC0003DMT400090149	Potato	cytosol	8.18	2.71
AT5G59220.1	Thale cress	nucleus	10.0	2.66
TraesCS5D01G188600.1	Wheat	peroxisome	8.18	2.58
TraesCS5B01G182000.1	Wheat	peroxisome	8.18	2.58
TraesCS5A01G183600.1	Wheat	peroxisome	8.18	2.58
PGSC0003DMT400006608	Potato	plastid	12.73	2.57
CDY33008	Canola	nucleus, plastid	9.09	2.53
CDX80307	Canola	nucleus, plastid	9.09	2.53
Bra002594.1-P	Field mustard	plastid	9.09	2.43
PGSC0003DMT400091100	Potato	cytosol, nucleus, plastid	7.27	2.34
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	7.27	2.29
EER96576	Sorghum	cytosol	7.27	2.24
PGSC0003DMT400046382	Potato	cytosol	10.91	2.21
KXG22152	Sorghum	nucleus	9.09	2.16
PGSC0003DMT400050448	Potato	cytosol	7.27	2.01
HORVU4Hr1G060370.1	Barley	nucleus	7.27	2.0
TraesCS4A01G094300.1	Wheat	nucleus	7.27	1.96
TraesCS4B01G210100.1	Wheat	nucleus	6.36	1.72
TraesCS4D01G210900.1	Wheat	nucleus	6.36	1.71
PGSC0003DMT400023517	Potato	nucleus	5.45	1.5
PGSC0003DMT400057134	Potato	mitochondrion	2.73	1.03
GSMUA_AchrUn_...	Banana	cytosol	1.82	0.71
Bra030455.1-P	Field mustard	cytosol	0.91	0.63
PGSC0003DMT400094534	Potato	cytosol	0.0	0.0
KXG35986	Sorghum	cytosol, peroxisome, plastid	0.0	0.0
PGSC0003DMT400019552	Potato	cytosol, peroxisome, plastid	0.0	0.0
CDY18067	Canola	cytosol	0.0	0.0
PGSC0003DMT400021210	Potato	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400049695	EnsemblPlantsGene:PGSC0003DMG401019311	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:PP2C	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	PANTHER:PTHR13832	PANTHER:PTHR13832:SF266	PGSC:PGSC0003DMG401019311
SignalP:SignalP-noTM	UniParc:UPI000296BB8A	UniProt:M1BP69	MapMan:35.1	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG401019311]

Coordinates

chr9:-:48292244..48292847

Molecular Weight (calculated)

12524.2 Da

IEP (calculated)

8.488

GRAVY (calculated)

-0.106

Length

110 amino acids

Sequence
(BLAST)

001: MDLCEFLGFV LGFVLCVSTC TYGESSKCLT VYKEGGAPAV FKSPKCPRWK LPEYGSEQWS KLPNARCQTA LHQGRRKSQE DRILCALDIH IPFPSKLSVS
101: TFTFDRFFIY

Best Arabidopsis Sequence Match ( AT3G63340.12 )
(BLAST)

001: MTSSIKSSLL NLGLLIIFFV FFFLVINCRG ESSTCLAVYK QGGAPAVFQS PKCPRWILQN WGSPTHSGAG RCHTAAIQGR RNYQEDRLLC ALDLRIPFPG
101: KTGTPKDVLV GIAAVFDGHN GAEASDMASK LLLDYFALHI NFLLDATFSA MTRKLIGRFP TKGDHSVILH GVSRDEIMHL YNLDFQMQFR DSLPLHFDDS
201: LPLDIMKEAL LRAIHDIDVT FTKEASNRKL NSGSTATIAL IADGQLMVAS IGDSKALLCS EKFETLEEAR ATLVKLYRER RRNRGSSPSR FSDFKLEHGN
301: GLLRFIAKEL TKDHHPNRED EKIRVEAAGG YVTEWAGVPR VNGQLTVSRA IGDLTYRSYG VISAPEVMDW QPLVANDSFL VVSSDGIFEK LEVQEVCDLL
401: WEVNNQTSSG AGVPSYCSIS LADCLVNTAF EKGSMDNMAA VVVPLKSNLV TQLQRKEQSM NDNKDKIASA LPCSNCTLPL PNDINLGPLQ LKQAQPLGTM
501: FNRLLRLKTE VFAAFICQRT LLGHLKGK

Arabidopsis Description

Protein phosphatase 2C family protein [Source:TAIR;Acc:AT3G63340]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.