Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G210900.1 | Wheat | nucleus | 96.8 | 95.85 |
| TraesCS4A01G094300.1 | Wheat | nucleus | 95.32 | 94.62 |
| HORVU4Hr1G060370.1 | Barley | nucleus | 90.15 | 91.5 |
| Os03t0268600-01 | Rice | nucleus | 76.11 | 76.49 |
| Zm00001d028574_P001 | Maize | nucleus | 74.14 | 76.01 |
| EER92493 | Sorghum | nucleus | 72.66 | 73.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.35 | 62.19 |
| CDY18067 | Canola | cytosol | 8.62 | 59.32 |
| GSMUA_Achr6P15180_001 | Banana | cytosol | 53.2 | 58.38 |
| TraesCS5B01G182000.1 | Wheat | peroxisome | 48.28 | 56.16 |
| CDY67227 | Canola | cytosol | 48.28 | 52.83 |
| CDY67257 | Canola | nucleus | 48.28 | 52.83 |
| VIT_06s0004g05460.t01 | Wine grape | nucleus | 50.99 | 52.67 |
| KRH31027 | Soybean | cytosol | 51.72 | 52.37 |
| KRH73525 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 13.55 | 51.89 |
| KRG97855 | Soybean | cytosol | 50.99 | 51.75 |
| Bra002038.1-P | Field mustard | nucleus | 48.28 | 51.58 |
| VIT_13s0019g02200.t01 | Wine grape | plastid | 50.49 | 51.25 |
| KRH15068 | Soybean | cytosol | 50.25 | 51.0 |
| Bra002594.1-P | Field mustard | plastid | 51.72 | 50.97 |
| Solyc05g052980.2.1 | Tomato | nucleus | 51.23 | 50.86 |
| CDY01017 | Canola | nucleus | 49.01 | 50.64 |
| AT3G11410.1 | Thale cress | cytosol | 49.75 | 50.63 |
| CDY08530 | Canola | nucleus | 48.77 | 50.38 |
| Bra034845.1-P | Field mustard | nucleus | 49.26 | 50.13 |
| KRH73067 | Soybean | cytosol | 50.25 | 50.12 |
| AT5G59220.1 | Thale cress | nucleus | 50.99 | 50.12 |
| AT2G29380.1 | Thale cress | nucleus | 44.58 | 50.0 |
| TraesCS3B01G394600.3 | Wheat | plastid | 52.46 | 49.77 |
| Bra018398.1-P | Field mustard | cytosol | 44.83 | 49.73 |
| CDY33008 | Canola | nucleus, plastid | 48.28 | 49.62 |
| Solyc03g096670.2.1 | Tomato | nucleus | 49.51 | 49.51 |
| CDX80307 | Canola | nucleus, plastid | 48.28 | 49.49 |
| CDY45436 | Canola | cytosol | 44.58 | 49.45 |
| CDY40181 | Canola | cytosol | 44.58 | 49.45 |
| PGSC0003DMT400043146 | Potato | nucleus | 49.51 | 49.02 |
| PGSC0003DMT400069947 | Potato | cytosol | 49.75 | 48.33 |
| CDY06705 | Canola | nucleus | 45.81 | 47.69 |
| PGSC0003DMT400077989 | Potato | cytosol | 47.78 | 47.32 |
| Solyc06g076400.2.1 | Tomato | nucleus | 47.04 | 46.59 |
| CDY10275 | Canola | nucleus | 48.28 | 45.58 |
| Bra015579.1-P | Field mustard | nucleus | 47.29 | 45.07 |
| AT1G07430.1 | Thale cress | nucleus | 49.01 | 45.02 |
| Bra031574.1-P | Field mustard | nucleus | 48.03 | 44.72 |
| CDY06259 | Canola | nucleus | 47.78 | 44.5 |
| TraesCS1B01G441400.1 | Wheat | cytosol | 41.13 | 43.49 |
| TraesCS3B01G266200.1 | Wheat | nucleus, peroxisome, plastid | 43.35 | 42.51 |
| Bra030455.1-P | Field mustard | cytosol | 15.27 | 38.99 |
| TraesCS1B01G375100.1 | Wheat | cytosol | 32.51 | 34.65 |
| TraesCS2B01G023600.1 | Wheat | cytosol | 39.16 | 34.57 |
| CDY36606 | Canola | nucleus | 21.18 | 34.4 |
| TraesCS1B01G475700.1 | Wheat | cytosol | 34.73 | 31.69 |
| TraesCS3B01G277900.1 | Wheat | cytosol | 31.77 | 30.94 |
| TraesCS3B01G171100.1 | Wheat | peroxisome | 25.86 | 29.91 |
| TraesCS3B01G170900.1 | Wheat | peroxisome | 22.17 | 28.66 |
| TraesCS3B01G240000.1 | Wheat | peroxisome, plasma membrane, vacuole | 33.74 | 28.6 |
| TraesCS3B01G171000.1 | Wheat | cytosol, nucleus, peroxisome | 22.41 | 28.35 |
| TraesCS7B01G297000.2 | Wheat | plasma membrane | 20.69 | 7.87 |
| PGSC0003DMT400049695 | Potato | extracellular | 1.72 | 6.36 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.1 | Gene3D:3.60.40.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004722 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043169 | InterPro:IPR001932 | InterPro:IPR036457 |
| PFAM:PF00481 | InterPro:PP2C | InterPro:PP2C_BS | InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom | ScanProsite:PS01032 |
| PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF518 | SMART:SM00332 | SUPFAM:SSF81606 | EnsemblPlantsGene:TraesCS4B01G210100 |
| EnsemblPlants:TraesCS4B01G210100.1 | TIGR:cd00143 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:+:448801799..448803253
Molecular Weight (calculated)
43650.0 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.516
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEIRRDVPE GTGAGAEGKG ADSHVGSRAA RRRRMEIRRH RLVAEHGAEE VSRKRRKLDG ESSTDEEEIE PAKYGVTSVC GRRRDMEDAV SVRPEFLPGH
101: HFFGVFDGHG CSHVATSCGE RMHEIVAEET GGARSLGSDD ADRWMGVMER SFARMDAEAV SSRSRASGAP TCRCELQLPK CDHVGSTAVV AVVGPRHLVV
201: ANCGDSRAVI GRGGAAIPLS SDHKPDRPDE LERIQAAGGR VIFWDGARVF GVLAMSRAIG DSYLKPFVIS DPEVRVLDRK DGEDEFLILA SDGLWDVVSN
301: EVACHVVRSC VRSKAKRRGG RSSPTSNLSP RQSSGSGSGS SSGDEAQNDG GGCADARSES DEESGEDVDE ACAEAAILLT KLAIARQSSD NVSVVVVNLR
401: RRRPRF
101: HFFGVFDGHG CSHVATSCGE RMHEIVAEET GGARSLGSDD ADRWMGVMER SFARMDAEAV SSRSRASGAP TCRCELQLPK CDHVGSTAVV AVVGPRHLVV
201: ANCGDSRAVI GRGGAAIPLS SDHKPDRPDE LERIQAAGGR VIFWDGARVF GVLAMSRAIG DSYLKPFVIS DPEVRVLDRK DGEDEFLILA SDGLWDVVSN
301: EVACHVVRSC VRSKAKRRGG RSSPTSNLSP RQSSGSGSGS SSGDEAQNDG GGCADARSES DEESGEDVDE ACAEAAILLT KLAIARQSSD NVSVVVVNLR
401: RRRPRF
001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
Arabidopsis Description
AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.