CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76554
CDX76731
CDX77691
CDX79135
CDX82120
CDX82921
CDX90440
CDY01498
CDY03194
CDY07739
CDY08877
CDY11503
CDY14471
CDY22516
CDY23721
CDY37705
CDY48030
CDY58053
CDY58505
CDY68316
CDY68675
CDY69797
CDY70860

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11410.1	CDX82120	AT1G73000.1	19407142
AT3G11410.1	CDY22516	AT1G73000.1	19407142
AT3G11410.1	CDY48030	AT1G73000.1	19407142
AT3G11410.1	CDX76731	AT2G26040.1	19407142
AT3G11410.1	CDY11503	AT2G26040.1	19407142
AT3G11410.1	CDY23721	AT2G33610.1	19033529
AT3G11410.1	CDY37705	AT2G33610.1	19033529
AT3G11410.1	CDY07739	AT2G38310.1	19407142
AT3G11410.1	CDY14471	AT2G38310.1	19407142
AT3G11410.1	CDX76554	AT4G17870.1	19407142
AT3G11410.1	CDX90440	AT4G17870.1	19407142
AT3G11410.1	CDY01498	AT4G17870.1	19407142
AT3G11410.1	CDY08877	AT4G17870.1	19407142
AT3G11410.1	CDY69797	AT4G17870.1	19407142
AT3G11410.1	CDY70860	AT4G17870.1	19407142
AT3G11410.1	CDX79135	AT4G22200.1	11181729
AT3G11410.1	CDX82921	AT4G22200.1	11181729
AT3G11410.1	CDX79135	AT4G22200.1	12034902
AT3G11410.1	CDX82921	AT4G22200.1	12034902
AT3G11410.1	CDY58053	AT5G45870.1	19407142
AT3G11410.1	CDY68675	AT5G45870.1	19407142
AT3G11410.1	CDX77691	AT5G46790.1	19407142
AT3G11410.1	CDY03194	AT5G46790.1	19407142
AT3G11410.1	CDY58505	AT5G46790.1	19407142
AT3G11410.1	CDY68316	AT5G46790.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67227	Canola	cytosol	98.11	98.11
Bra002038.1-P	Field mustard	nucleus	98.11	95.79
CDY01017	Canola	nucleus	87.6	82.7
CDY08530	Canola	nucleus	87.33	82.44
AT3G11410.1	Thale cress	cytosol	85.71	79.7
CDY18067	Canola	cytosol	11.05	69.49
GSMUA_AchrUn_...	Banana	cytosol	46.09	60.42
Solyc05g052980.2.1	Tomato	nucleus	64.96	58.92
PGSC0003DMT400069947	Potato	cytosol	65.5	58.13
KXG35986	Sorghum	cytosol, peroxisome, plastid	31.54	57.64
VIT_13s0019g02200.t01	Wine grape	plastid	60.92	56.5
Solyc03g096670.2.1	Tomato	nucleus	61.19	55.91
PGSC0003DMT400043146	Potato	nucleus	61.19	55.37
CDY40181	Canola	cytosol	53.37	54.1
CDY45436	Canola	cytosol	53.1	53.83
CDY06705	Canola	nucleus	55.8	53.08
TraesCS5A01G183600.1	Wheat	peroxisome	49.6	52.72
GSMUA_Achr6P15180_001	Banana	cytosol	52.56	52.7
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.6	52.57
EER96576	Sorghum	cytosol	50.13	52.1
KRH73525	Soybean	cytosol, mitochondrion, peroxisome, plastid	14.82	51.89
TraesCS5D01G188600.1	Wheat	peroxisome	48.79	51.86
GSMUA_Achr11P...	Banana	cytosol	54.99	51.65
TraesCS5B01G182000.1	Wheat	peroxisome	48.52	51.58
Os09t0325700-01	Rice	cytosol	49.6	51.4
GSMUA_Achr5P29000_001	Banana	cytosol	52.83	51.31
TraesCS3A01G362200.1	Wheat	nucleus, plastid	53.64	50.9
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	49.06	50.84
HORVU3Hr1G085930.3	Barley	nucleus, plastid	53.64	50.64
TraesCS3D01G355900.1	Wheat	plastid	54.18	50.63
CDY33008	Canola	nucleus, plastid	53.37	50.13
HORVU4Hr1G060370.1	Barley	nucleus	53.91	50.0
CDX80307	Canola	nucleus, plastid	53.37	50.0
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	54.18	48.55
CDY10275	Canola	nucleus	56.06	48.37
TraesCS4B01G210100.1	Wheat	nucleus	52.83	48.28
TraesCS4D01G210900.1	Wheat	nucleus	53.1	48.05
Os03t0268600-01	Rice	nucleus	52.29	48.02
Zm00001d028574_P001	Maize	nucleus	51.21	47.98
EER92493	Sorghum	nucleus	51.75	47.88
EES01744	Sorghum	plastid	53.1	47.82
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	52.83	47.46
TraesCS4A01G094300.1	Wheat	nucleus	52.29	47.43
Zm00001d042886_P001	Maize	nucleus	52.02	47.3
TraesCS3B01G394600.3	Wheat	plastid	54.18	46.96
CDY06259	Canola	nucleus	54.45	46.33
CDY50002	Canola	cytosol	20.22	43.86
KXG22152	Sorghum	nucleus	53.64	42.89
CDX96761	Canola	cytosol	36.93	39.14
CDX83901	Canola	cytosol	36.66	38.86
CDX92752	Canola	cytosol	41.51	37.56
CDY50003	Canola	nucleus	41.24	37.32
CDY42756	Canola	cytosol	41.51	37.29
CDX94382	Canola	cytosol	42.05	37.14
CDY36606	Canola	nucleus	24.8	36.8
CDX89368	Canola	cytosol	41.78	36.38
CDY14318	Canola	nucleus	41.24	36.26
CDY54381	Canola	cytosol, mitochondrion, plastid	41.24	36.17
CDY38260	Canola	cytosol	40.97	36.02
CDY38877	Canola	cytosol	38.81	35.47
CDY32620	Canola	cytosol	35.85	34.02
CDY26234	Canola	cytosol	40.16	30.04
CDY48313	Canola	cytosol	40.43	29.94
CDX72943	Canola	cytosol, peroxisome, plastid	38.27	29.89
CDX96432	Canola	cytosol, peroxisome, plastid	38.54	29.55
CDY53715	Canola	plasma membrane, vacuole	22.91	8.21
CDX93912	Canola	plasma membrane, vacuole	22.91	8.2

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	GO:A0A078JPH8	UniProt:A0A078JPH8
EnsemblPlants:CDY67257	ProteinID:CDY67257	ProteinID:CDY67257.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721
GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00060515001
InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SMART:SM00331
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0004EDBB66	SEG:seg	:	:

Description

BnaAnng23920DBnaAnng23920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPH8]

Coordinates

chrLK035907:-:4880..6430

Molecular Weight (calculated)

40516.0 Da

IEP (calculated)

5.911

GRAVY (calculated)

-0.308

Length

371 amino acids

Sequence
(BLAST)

001: MAGICCGVVG ESEPAAPVDS VTRTSLKRRL DLLPSIKIVA KSAVAPPLET CRKRQKRETP SLVSTSPDLE SNSISSSATE EAESYFFSDA PKIGTTSVCG
101: RRRDMEDAVS LHPSLLRKNS EDLHFYGVFD GHGCSHVAEK CRERLHEIVK HEVEAMASDY EWKETMAKSF QKMDREVSQR DASRSAKISC RCELQSPQCD
201: AVGSTAVVSV VTPEKIVVSN CGDSRAVLCR NGLAIALSSD HKPDRPDELN RIQEAGGRVI YWDGARVLGV LAMSRAIGDN YLKPYVIPDP EVTVTDRTED
301: DECLILASDG LWDVVTNEMA CGVARMCLKD SDAAHNACSD AALLLTKLAL ARQSSDNVSV VVVDLRKRRN N

Best Arabidopsis Sequence Match ( AT3G11410.1 )
(BLAST)

001: MAGICCGVVG ETEPAAPVDS TSRASLRRRL DLLPSIKIVA DSAVAPPLEN CRKRQKRETV VLSTLPGNLD LDSNVRSENK KARSAVTNSN SVTEAESFFS
101: DVPKIGTTSV CGRRRDMEDA VSIHPSFLQR NSENHHFYGV FDGHGCSHVA EKCRERLHDI VKKEVEVMAS DEWTETMVKS FQKMDKEVSQ RECNLVVNGA
201: TRSMKNSCRC ELQSPQCDAV GSTAVVSVVT PEKIIVSNCG DSRAVLCRNG VAIPLSVDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDEDE CLILASDGLW DVVPNETACG VARMCLRGAG AGDDSDAAHN ACSDAALLLT KLALARQSSD NVSVVVVDLR KRRNNQASS

Arabidopsis Description

PP2CAProtein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.